# Pipeline started at 06-15 07:17:25 # pid hash cid runtime mem cmd lock 217612 f63c948272 1 0:00:00.110000 0.0004 ln lock.raw__H9_PRO-seq_90_R1.fastq.gz 217614 2fa2004c00 2 0:00:00.030000 0.0 ln lock.raw__H9_PRO-seq_90_R2.fastq.gz 217617 f7e4bed0db 3 0:02:49.390000 0.0025 pigz lock.fastq__H9_PRO-seq_90_R2.fastq 350867 19de982b8d 4 0:02:26.500000 0.0025 pigz lock.fastq__H9_PRO-seq_90_R2.fastq 332572 a3f725c762 5 0:02:47.780000 3.0942 cutadapt lock.fastq__H9_PRO-seq_90_R1_processed.fastq 332770 f9dd9d146f 6 0:00:47.390000 0.0008 seqtk lock.fastq__H9_PRO-seq_90_R1_processed.fastq 332771 f9dd9d146f 7 0:00:51.740000 0.0023 seqtk lock.fastq__H9_PRO-seq_90_R1_processed.fastq 332870 3615a6271f 7f 0:00:55.520000 0.1784 fastqc lock.trimmed_fastqc 333200 15a7cc77ab 8 0:01:02.270000 2.0482 seqkit lock.fastq__H9_PRO-seq_90_R1_trimmed.fastq 333284 67749a108c 9 0:00:36 0.0008 seqtk lock.fastq__H9_PRO-seq_90_R1_trimmed.fastq 333285 67749a108c 10 0:00:49.690000 0.0023 seqtk lock.fastq__H9_PRO-seq_90_R1_trimmed.fastq 333542 caf579d11b 11 0:00:00.040000 0.0 touch lock.fastq__processed_R1.flag 333544 ae3ef802ca 12 0:02:08.920000 3.3807 cutadapt lock.fastq__H9_PRO-seq_90_R2_trimmed.fastq 333910 00ba7a7ead 13 0:00:27.310000 0.0008 seqtk lock.fastq__H9_PRO-seq_90_R2_trimmed.fastq 333911 00ba7a7ead 14 0:00:32.600000 0.0023 seqtk lock.fastq__H9_PRO-seq_90_R2_trimmed.fastq 334000 3615a6271f 14f 0:00:56.320000 0.1794 fastqc lock.trimmed_fastqc 334070 05a210c658 14f 0:01:05.440000 0.1662 fastqc lock.trimmed_fastqc_R2 334203 73ff2451f5 15 0:03:25.910000 5.9105 fastq_pair lock.cutadapt__H9_PRO-seq_90.histogram 334807 903b1cb3ef 16 0:01:24.320000 0.1264 flash lock.cutadapt__H9_PRO-seq_90.histogram 335026 262ecccdd9 17 0:00:04.840000 0.3165 Rscript lock.cutadapt__H9_PRO-seq_90_adapter_insertion_distribution.pdf 335056 0e4878ff52 18 0:00:31.480000 0.002 cp lock.fastq__H9_PRO-seq_90_R2_trimmed_dups.fastq 335273 418dccf825 19 0:00:00.030000 0.0 touch 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lock.aligned_hg38__H9_PRO-seq_90_PE1.bam.bai 350642 c05af9228e 72 0:00:14.260000 1.5987 /scratch/jps3dp/tools/databio//peppro/tools/bamQC.py lock.QC_hg38__H9_PRO-seq_90_bamQC.tsv 350688 1c806bf3bd 73 0:00:07.880000 0.0095 samtools lock.aligned_hg38__H9_PRO-seq_90_unmap.bam 350731 dc318f10a2 74 0:01:01.800000 0.0063 samtools lock.aligned_hg38__H9_PRO-seq_90_minus.bam 351023 b6d2f2a218 75 0:00:59.710000 0.0063 samtools lock.aligned_hg38__H9_PRO-seq_90_minus.bam 351103 17f4b038df 76 0:00:00.250000 0.0015 sed lock.QC_hg38__minus_TSS.tsv 351105 d4053b5382 77 0:00:06.120000 0.9713 /scratch/jps3dp/tools/databio//peppro/tools/pyTssEnrichment.py lock.QC_hg38__H9_PRO-seq_90_plus_TssEnrichment.txt 351136 e00de62e94 78 0:00:05.150000 0.9494 /scratch/jps3dp/tools/databio//peppro/tools/pyTssEnrichment.py lock.QC_hg38__H9_PRO-seq_90_minus_TssEnrichment.txt 351169 002d3ea7eb 79 0:00:05.680000 0.3186 Rscript lock.QC_hg38__H9_PRO-seq_90_TSSenrichment.pdf 351190 c531979eab 80 0:00:00.040000 0.0 samtools 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