# Pipeline started at 06-11 16:59:47 # pid hash cid runtime mem cmd lock 86339 1c776d7a6b 1 0:00:00.030000 0.0 ln lock.raw__K562_PRO-seq_04.fastq.gz 86344 47a1d9fd71 2 0:00:41.100000 0.0025 pigz lock.fastq__K562_PRO-seq_04_R1.fastq 86843 e839ff8f0b 3 0:00:26.220000 2.6753 cutadapt lock.fastq__K562_PRO-seq_04_R1_processed.fastq 86945 f579ec82c5 4 0:00:13.750000 0.0008 seqtk lock.fastq__K562_PRO-seq_04_R1_processed.fastq 86946 f579ec82c5 5 0:00:26.570000 0.0023 seqtk lock.fastq__K562_PRO-seq_04_R1_processed.fastq 87049 78c13b97da 6 0:00:00.030000 0.0 echo lock.fastqc__K562_PRO-seq_04_R1_processed_fastqc.html 87058 6f5c7d328b 6f 0:01:10.320000 0.1966 fastqc lock.trimmed_fastqc 87152 92e1ac75ad 7 0:00:00.030000 0.0 touch lock.fastq__processed_R1.flag 87153 c26b7c2414 8 0:00:05.020000 0.3183 Rscript lock.cutadapt__K562_PRO-seq_04_R1_adapter_insertion_distribution.pdf 87574 0689dbd69e 10 0:10:10.590000 0.0037 samtools lock.aligned_hg38__K562_PRO-seq_04_sort.bam 87573 0689dbd69e 9 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lock.QC_hg38__K562_PRO-seq_04_minus_TssEnrichment.txt 91821 9833d3db6f 31 0:00:07.070000 0.2062 Rscript lock.QC_hg38__K562_PRO-seq_04_TSSenrichment.pdf 91852 02e3b7fe0a 32 0:00:00.040000 0.0 samtools lock.QC_hg38__chr_order.txt 91854 02e3b7fe0a 34 0:00:00.060000 0.0 awk lock.QC_hg38__chr_order.txt 91853 02e3b7fe0a 33 0:00:00.080000 0.0 grep lock.QC_hg38__chr_order.txt 91855 02e3b7fe0a 35 0:00:00.100000 0.0 awk lock.QC_hg38__chr_order.txt 91857 d437b88bc6 36 0:00:00.040000 0.0022 cut lock.QC_hg38__chr_keep.txt 91860 3642944150 37 0:00:01.650000 0.0023 grep lock.QC_hg38__hg38_ensembl_gene_body.bed 91861 3642944150 38 0:00:01.930000 0.0956 bedtools lock.QC_hg38__hg38_ensembl_gene_body.bed 91864 a85f038fa5 39 0:00:00.290000 0.0026 grep lock.QC_hg38__hg38_ensembl_gene_body.bed 91865 a85f038fa5 40 0:00:00.440000 0.0057 bedtools lock.QC_hg38__hg38_ensembl_gene_body.bed 91868 4c3e8fc3a7 41 0:00:24.120000 0.009 bedtools lock.QC_hg38__K562_PRO-seq_04_TSS_density.bed 91870 4c3e8fc3a7 43 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