# Pipeline started at 06-11 17:02:36 # pid hash cid runtime mem cmd lock 358201 6c3896cbdb 1 0:00:00.030000 0.0 ln lock.raw__K562_PRO-seq_10.fastq.gz 358202 54e340b9c4 2 0:02:07.170000 0.0025 pigz lock.fastq__K562_PRO-seq_10_R1.fastq 359564 c346dac081 3 0:01:48.790000 2.8582 cutadapt lock.fastq__K562_PRO-seq_10_R1_processed.fastq 360121 aa47d912d8 4 0:01:27.480000 0.0008 seqtk lock.fastq__K562_PRO-seq_10_R1_processed.fastq 360123 aa47d912d8 5 0:01:44.580000 0.0023 seqtk lock.fastq__K562_PRO-seq_10_R1_processed.fastq 361209 78c13b97da 6 0:00:00.030000 0.0 echo lock.fastqc__K562_PRO-seq_10_R1_processed_fastqc.html 361239 732f7c3a87 6f 0:02:45.580000 0.2132 fastqc lock.trimmed_fastqc 361414 b8475180ad 7 0:00:00.090000 0.0015 touch lock.fastq__processed_R1.flag 361415 f1c2c364ea 8 0:00:07.110000 0.2011 Rscript lock.cutadapt__K562_PRO-seq_10_R1_adapter_insertion_distribution.pdf 362121 08b37f2eb3 9 0:25:46.590000 3.7189 bowtie2 lock.aligned_hg38__K562_PRO-seq_10_sort.bam 362122 08b37f2eb3 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lock.QC_hg38__K562_PRO-seq_10_minus_TssEnrichment.txt 376806 6d6e531906 31 0:00:06.100000 0.3163 Rscript lock.QC_hg38__K562_PRO-seq_10_TSSenrichment.pdf 376829 a21de2d99d 32 0:00:00.040000 0.0 samtools lock.QC_hg38__chr_order.txt 376831 a21de2d99d 34 0:00:00.060000 0.0 awk lock.QC_hg38__chr_order.txt 376830 a21de2d99d 33 0:00:00.080000 0.0 grep lock.QC_hg38__chr_order.txt 376832 a21de2d99d 35 0:00:00.090000 0.0 awk lock.QC_hg38__chr_order.txt 376834 5e32b938e4 36 0:00:00.020000 0.0 cut lock.QC_hg38__chr_keep.txt 376836 32cd9aad8e 37 0:00:01.640000 0.0023 grep lock.QC_hg38__hg38_ensembl_gene_body.bed 376837 32cd9aad8e 38 0:00:01.840000 0.097 bedtools lock.QC_hg38__hg38_ensembl_gene_body.bed 376841 09371f20c6 39 0:00:00.360000 0.0026 grep lock.QC_hg38__hg38_ensembl_gene_body.bed 376842 09371f20c6 40 0:00:00.600000 0.0065 bedtools lock.QC_hg38__hg38_ensembl_gene_body.bed 376844 f1c94a6f7f 41 0:00:57.120000 0.0158 bedtools lock.QC_hg38__K562_PRO-seq_10_TSS_density.bed 376846 f1c94a6f7f 43 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