sample_name sample_desc treatment protocol organism read_type umi_len read1 srr Raw_reads Fastq_reads Reads_with_adapter Uninformative_adapter_reads Pct_uninformative_adapter_reads Trimmed_reads Trim_loss_rate Peak_adapter_insertion_size Degradation_ratio Aligned_reads_human_rDNA Alignment_rate_human_rDNA Mapped_reads QC_filtered_reads Aligned_reads Alignment_rate Total_efficiency Read_depth Mitochondrial_reads Maximum_read_length Genome_size NRF PBC1 PBC2 Unmapped_reads TSS_coding_score TSS_non-coding_score File_mb Read_type Genome Pause_index Plus_FRiP Minus_FRiP mRNA_contamination Time Success Duplicate_reads Frac_exp_unique_at_10M read2 K562_PRO-seq_02 2% subsample of K562 PRO-seq 2% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_2pct.fastq.gz K562_PRO_2pct 9931075 9931075 8460719.0 248752.0 2.5048 9682323 2.5 34 0.2307 893235.0 9.23 8680538 933765 7746773 80.01 78.01 1.95 183336 100 3099922541 0.95 0.98 47.71 108550 14.1 5.7 746.84 SINGLE hg38 10.66 0.36 0.34 1.44 0:26:36 06-14-21:32:48 K562_PRO-seq_04 4% subsample of K562 PRO-seq 4% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_4pct.fastq.gz K562_PRO_4pct 19858924 19858924 16916658.0 497565.0 2.5055 19361359 2.51 34 0.2307 1787129.0 9.23 17357618 1866999 15490619 80.01 78.0 2.67 365645 100 3099922541 0.91 0.96 27.36 216612 14.0 5.8 1485.53 SINGLE hg38 10.66 0.36 0.34 1.42 0:22:23 06-14-21:28:35 K562_PRO-seq_06 6% subsample of K562 PRO-seq 6% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_6pct.fastq.gz K562_PRO_6pct 29786346 29786346 25373082.0 747032.0 2.508 29039314 2.51 34 0.2311 2680287.0 9.23 26034464 2801424 23233040 80.01 78.0 3.34 548203 100 3099922541 0.87 0.94 19.95 324563 13.9 5.8 2220.82 SINGLE hg38 10.67 0.36 0.34 1.41 0:27:19 06-14-21:33:32 K562_PRO-seq_08 8% subsample of K562 PRO-seq 8% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_8pct.fastq.gz K562_PRO_8pct 39716621 39716621 33831973.0 995532.0 2.5066 38721089 2.51 34 0.2313 3573907.0 9.23 34714884 3735729 30979155 80.01 78.0 3.98 731070 100 3099922541 0.84 0.92 16.03 432298 13.9 5.8 2954.27 SINGLE hg38 10.59 0.36 0.34 1.41 0:26:19 06-14-21:35:23 K562_PRO-seq_10 10% subsample of K562 PRO-seq 10% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_10pct.fastq.gz K562_PRO_10pct 49645278 49645278 42291028.0 1244198.0 2.5062 48401080 2.51 34 0.2312 4467182.0 9.23 43394061 4669173 38724888 80.01 78.0 4.6 914079 100 3099922541 0.81 0.91 13.6 539837 13.9 5.8 3686.04 SINGLE hg38 10.6 0.36 0.34 1.4 0:29:34 06-14-21:38:38 K562_PRO-seq_20 20% subsample of K562 PRO-seq 20% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_20pct.fastq.gz K562_PRO_20pct 99310774 99310774 84602654.0 2486025.0 2.5033 96824749 2.5 34 0.2311 8934644.0 9.23 86810990 9341224 77469766 80.01 78.01 7.58 1829855 100 3099922541 0.69 0.84 8.4 1079115 13.9 5.8 7335.34 SINGLE hg38 10.75 0.36 0.34 1.39 3:28:03 06-15-10:25:55 K562_PRO-seq_30 30% subsample of K562 PRO-seq 30% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_30pct.fastq.gz K562_PRO_30pct 148988721 148988721 126928151.0 3729909.0 2.5035 145258812 2.5 34 0.2312 13404967.0 9.23 130234299 14019843 116214456 80.01 78.0 10.45 2744825 100 3099922541 0.6 0.79 6.54 1619546 13.9 5.8 10969.75 SINGLE hg38 10.73 0.36 0.34 1.38 4:32:19 06-15-11:43:19 K562_PRO-seq_40 40% subsample of K562 PRO-seq 40% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_40pct.fastq.gz K562_PRO_40pct 198648534 198648534 169233215.0 4973679.0 2.5038 193674855 2.5 34 0.2312 17873691.0 9.23 173642751 18693246 154949505 80.0 78.0 13.26 3660275 100 3099922541 0.53 0.74 5.58 2158413 13.9 5.8 14593.59 SINGLE hg38 10.83 0.36 0.34 1.38 5:38:58 06-15-12:49:59 K562_PRO-seq_50 50% subsample of K562 PRO-seq 50% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_50pct.fastq.gz K562_PRO_50pct 248316549 248316549 211550349.0 6217636.0 2.5039 242098913 2.5 34 0.2313 22342476.0 9.23 217058791 23375045 193683746 80.0 78.0 16.03 4576683 100 3099922541 0.47 0.7 4.99 2697646 13.9 5.8 18213.9 SINGLE hg38 10.88 0.36 0.34 1.37 6:53:02 06-15-14:04:03 K562_PRO-seq_60 60% subsample of K562 PRO-seq 60% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_60pct.fastq.gz K562_PRO_60pct 297971266 297971266 253852065.0 7461091.0 2.504 290510175 2.5 34 0.2313 26810031.0 9.23 260464989 28049270 232415719 80.0 78.0 18.77 5490660 100 3099922541 0.42 0.66 4.61 3235155 13.9 5.8 21820.91 SINGLE hg38 10.88 0.36 0.34 1.37 7:21:47 06-15-14:32:49 K562_PRO-seq_70 70% subsample of K562 PRO-seq 70% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_70pct.fastq.gz K562_PRO_70pct 347627030 347627030 296156505.0 8705410.0 2.5042 338921620 2.5 34 0.2313 31276877.0 9.23 303870332 32723809 271146523 80.0 78.0 21.5 6405734 100 3099922541 0.38 0.63 4.34 3774411 13.9 5.8 25439.68 SINGLE hg38 10.88 0.36 0.34 1.37 1:47:12 06-14-22:57:22 K562_PRO-seq_80 80% subsample of K562 PRO-seq 80% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_80pct.fastq.gz K562_PRO_80pct 397272644 397272644 338450269.0 9949631.0 2.5045 387323013 2.5 34 0.2313 35748058.0 9.23 347261528 37392862 309868666 80.0 78.0 24.22 7320857 100 3099922541 0.34 0.6 4.14 4313427 13.9 5.8 29053.1 SINGLE hg38 10.91 0.36 0.34 1.37 2:01:34 06-14-23:11:45 K562_PRO-seq_90 90% subsample of K562 PRO-seq 90% subsample PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_PRO_90pct.fastq.gz K562_PRO_90pct 446930263 446930263 380755198.0 11194446.0 2.5047 435735817 2.5 34 0.2312 40216117.0 9.23 390665301 42066109 348599192 80.0 78.0 26.92 8235203 100 3099922541 0.31 0.57 4.0 4854399 13.9 5.8 32665.2 SINGLE hg38 10.94 0.36 0.34 1.37 1:59:42 06-14-23:10:30 K562_PRO-seq_100 Unsampled K562 PRO-seq none PRO human SINGLE 0 ['/project/shefflab/data//sra_fastq/SRR1554311.fastq.gz', '/project/shefflab/data//sra_fastq/SRR1554312.fastq.gz'] SRR155431[1-2] 496581677 496581677 423059183.0 12437983.0 2.5047 484143694 2.5 34 0.2312 44680364.0 9.23 434069790 46741044 387328746 80.0 78.0 29.61 9149071 100 3099922541 0.28 0.54 3.89 5393540 13.9 5.8 38578.5 SINGLE hg38 10.96 0.36 0.34 1.37 2:23:44 06-14-23:34:32 K562_RNA-seq_0 100% K562 PRO-seq + 0% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_0pctRNA.fastq.gz K562_0pctRNA 70000000 70000000 59632858.0 1752284.0 2.5033 68247716 2.5 34 0.2311 6298510.0 9.23 61188335 6585652 54602683 80.01 78.0 5.84 1289952 100 3099922541 0.76 0.88 10.64 760871 13.9 5.8 5665.7 SINGLE hg38 10.69 0.36 0.34 1.4 2:33:27 06-15-09:50:34 K562_RNA-seq_10 90% K562 PRO-seq + 10% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_10pctRNA.fastq.gz K562_10pctRNA 70000000 70000000 56155013.0 1576345.0 2.2519 68423655 2.25 34 0.231 5831595.0 8.52 60754568 7195486 53559082 78.28 76.51 5.9 1579435 100 3099922541 0.77 0.89 11.77 1837492 15.7 5.5 5660.06 SINGLE hg38 9.88 0.36 0.34 1.97 0:37:46 06-14-21:49:02 K562_RNA-seq_20 80% K562 PRO-seq + 20% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_20pctRNA.fastq.gz K562_20pctRNA 70000000 70000000 52676382.0 1401144.0 2.0016 68598856 2.0 34 0.231 5362282.0 7.82 60323103 7805805 52517298 76.56 75.02 6.01 1870021 100 3099922541 0.77 0.9 12.6 2913471 16.0 5.2 5645.61 SINGLE hg38 9.34 0.36 0.35 2.46 0:33:30 06-14-21:44:47 K562_RNA-seq_30 70% K562 PRO-seq + 30% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_30pctRNA.fastq.gz K562_30pctRNA 70000000 70000000 49200456.0 1225550.0 1.7508 68774450 1.75 34 0.231 4894873.0 7.12 59888336 8412839 51475497 74.85 73.54 6.15 2160789 100 3099922541 0.77 0.9 13.32 3991241 16.3 4.9 5620.96 SINGLE hg38 8.95 0.37 0.36 2.97 0:36:29 06-14-21:47:46 K562_RNA-seq_40 60% K562 PRO-seq + 40% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_40pctRNA.fastq.gz K562_40pctRNA 70000000 70000000 45723195.0 1050230.0 1.5003 68949770 1.5 34 0.2309 4427990.0 6.42 59454882 9022968 50431914 73.14 72.05 6.34 2452024 100 3099922541 0.75 0.9 13.91 5066898 16.6 5.0 5584.92 SINGLE hg38 8.63 0.37 0.36 3.53 0:32:36 06-14-21:44:23 K562_RNA-seq_50 50% K562 PRO-seq + 50% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_50pctRNA.fastq.gz K562_50pctRNA 70000000 70000000 42246395.0 875215.0 1.2503 69124785 1.25 34 0.231 3959053.0 5.73 59023095 9634021 49389074 71.45 70.56 6.57 2741453 100 3099922541 0.73 0.89 14.29 6142637 17.0 4.6 5536.54 SINGLE hg38 8.38 0.38 0.37 4.15 0:35:54 06-14-21:47:41 K562_RNA-seq_60 40% K562 PRO-seq + 60% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_60pctRNA.fastq.gz K562_60pctRNA 70000000 70000000 38768961.0 700276.0 1.0004 69299724 1.0 34 0.2309 3492589.0 5.04 58587924 10244576 48343348 69.76 69.06 6.87 3031668 100 3099922541 0.69 0.89 14.34 7219211 17.4 4.2 5477.44 SINGLE hg38 8.19 0.38 0.38 4.92 0:32:30 06-14-21:44:18 K562_RNA-seq_70 30% K562 PRO-seq + 70% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_70pctRNA.fastq.gz K562_70pctRNA 70000000 70000000 35291630.0 524857.0 0.7498 69475143 0.75 34 0.2308 3025540.0 4.35 58152869 10854484 47298385 68.08 67.57 7.29 3321940 100 3099922541 0.65 0.88 13.92 8296734 17.7 3.9 5404.02 SINGLE hg38 7.99 0.39 0.38 5.92 2:18:47 06-15-09:35:58 K562_RNA-seq_80 20% K562 PRO-seq + 80% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_80pctRNA.fastq.gz K562_80pctRNA 70000000 70000000 31815025.0 349949.0 0.4999 69650051 0.5 34 0.2308 2559080.0 3.67 57718557 11466593 46251964 66.41 66.07 7.92 3613062 100 3099922541 0.6 0.86 12.89 9372414 18.1 3.4 5315.52 SINGLE hg38 7.77 0.39 0.39 7.26 2:18:35 06-15-09:35:45 K562_RNA-seq_90 10% K562 PRO-seq + 90% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_90pctRNA.fastq.gz K562_90pctRNA 70000000 70000000 28335107.0 175101.0 0.2501 69824899 0.25 34 0.2307 2091621.0 3.0 57285710 12079693 45206017 64.74 64.58 9.03 3902862 100 3099922541 0.54 0.83 11.16 10447568 18.6 3.0 5212.18 SINGLE hg38 7.62 0.39 0.4 9.16 2:09:26 06-15-09:26:37 K562_RNA-seq_100 0% K562 PRO-seq + 100% K562 RNA-seq 70M total reads PRO human SINGLE 0 /project/shefflab/data//guertin/fastq/K562_100pctRNA.fastq.gz K562_100pctRNA 70000000 70000000 24858626.0 0.0 0.0 70000000 0.0 0 0.0 1624026.0 2.32 56850944 12689564 44161380 63.09 63.09 11.83 4192362 76 3099922541 0.47 0.79 8.82 11525030 19.1 2.5 5091.82 SINGLE hg38 7.79 0.4 0.41 12.77 2:07:14 06-15-09:24:25 K562_GRO-seq K562 GRO-seq none GRO human SINGLE 0 /project/shefflab/data//sra_fastq/SRR1552484.fastq.gz SRR1552484 30363736 30363736 22296806.0 1041369.0 3.4296 29322367 3.43 22 0.7189 4309471.0 14.7 22899670 4468262 18431408 62.86 60.7 2.65 843399 50 3099922541 0.7 0.86 8.69 2113226 23.9 8.6 1322.25 SINGLE hg38 10.74 0.34 0.32 1.33 0:20:51 06-14-21:34:52 HelaS3_GRO-seq HelaS3 GRO-seq none GRO human SINGLE 0 ['/project/shefflab/data//sra_fastq/SRR1693611.fastq.gz', '/project/shefflab/data//sra_fastq/SRR1693612.fastq.gz'] SRR169361[1-2] 72718941 72718941 22179715.0 0.0 0.0 72718941 0.0 0 0.0 40879756.0 56.22 21029691 6163527 14866164 20.44 20.44 2.34 1906316 51 3099922541 0.72 0.91 13.55 10809494 7.3 4.1 3550.33 SINGLE hg38 4.92 0.37 0.33 3.22 0:16:11 06-14-21:30:12 Jurkat_ChRO-seq_1 Jurkat ChRO-seq none PRO human SINGLE 6 /project/shefflab/data//sra_fastq/SRR7616133.fastq.gz SRR7616133 37740511 37740511 34473620.0 2012355.0 5.3321 32783879 13.13 20 0.9566 3493243.0 10.66 28177350 6839271 21338079 65.09 56.54 3.87 4738 70 3099922541 0.38 0.64 3.39 1113286 55.1 12.6 1330.25 SINGLE hg38 42.69 0.36 0.34 1.19 0:19:54 06-14-21:34:30 14846147.0 0.7897 Jurkat_ChRO-seq_2 Jurkat ChRO-seq none PRO human SINGLE 6 /project/shefflab/data//sra_fastq/SRR7616134.fastq.gz SRR7616134 49841170 49841170 42416468.0 223715.0 0.4489 48264585 3.16 39 0.4899 3950647.0 8.19 41878067 7874013 34004054 70.45 68.22 4.27 18250 70 3099922541 0.53 0.8 8.39 2435871 68.4 23.2 1914.91 SINGLE hg38 85.85 0.36 0.35 1.2 1:55:16 06-15-09:12:28 5764233.0 0.646 HEK_PRO-seq HEK w/ osTIR1, ZNF143AID PRO-seq Auxin PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/SRR8608074_PE1.fastq.gz SRR8608074 51533198 51533198 16626152.0 5380555.0 20.8819 40207164 21.98 37 0.5783 4230222.0 10.52 33104378 18769818 14334559.5 35.65 27.82 2.41 325556 38 3099922541 1.0 7591734.5 7591734.5 2807990 16.0 2.4 1337.94 PAIRED hg38 10.23 0.39 0.37 1.25 2:14:20 06-15-09:31:31 916082.0 0.9099 /project/shefflab/data//guertin/fastq/SRR8608074_PE2.fastq.gz HEK_ARF_PRO-seq HEK w/ osTIR1, ZNF143AID, ARF PRO-seq Auxin PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/SRR8608070_PE1.fastq.gz SRR8608070 53049272 53049272 21262101.0 8863359.0 33.4156 32625384 38.5 17 1.349 3622152.0 11.1 24911965 15309473 9602492.0 29.43 18.1 2.05 252493 38 3099922541 1.0 5434839.0 5434839.0 3997391 18.5 2.4 1302.45 PAIRED hg38 11.57 0.42 0.39 1.29 1:51:34 06-15-09:08:45 778059.0 0.9164 /project/shefflab/data//guertin/fastq/SRR8608070_PE2.fastq.gz H9_PRO-seq_1 H9 PRO-seq DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE1.fastq.gz H9_DMSO_rep1 97729860 97729860 34822522.0 17998987.0 36.8342 60442686 38.15 20 0.8896 5408680.0 8.95 48339851 27585022 20754829.0 34.34 21.24 3.26 674956 38 3099922541 1.0 10983354.0 10983354.0 6258301 26.7 10.1 2469.73 PAIRED hg38 26.45 0.38 0.36 1.23 2:50:51 06-15-15:50:01 3516802.0 0.8774 /project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE2.fastq.gz H9_PRO-seq_2 H9 PRO-seq DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_DMSO_rep2_PE1.fastq.gz H9_DMSO_rep2 115714026 115714026 45847892.0 28610139.0 49.4497 56658510 51.04 20 1.0321 5827176.0 10.28 43719896 25554169 18165727.0 32.06 15.7 3.11 840435 38 3099922541 1.0 9741100.0 9741100.0 6664276 33.8 12.3 2754.18 PAIRED hg38 34.0 0.39 0.36 1.29 2:35:29 06-15-15:34:39 3047417.0 0.8541 /project/shefflab/data//guertin/fastq/H9_DMSO_rep2_PE2.fastq.gz H9_PRO-seq_3 H9 PRO-seq DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_DMSO_rep3_PE1.fastq.gz H9_DMSO_rep3 92628962 92628962 34725419.0 18106301.0 39.0943 54838340 40.8 20 0.9769 5405874.0 9.86 43295089 25127415 18167674.5 33.13 19.61 2.98 711009 38 3099922541 1.0 9740520.5 9740520.5 5843431 28.6 10.5 2340.86 PAIRED hg38 27.32 0.39 0.36 1.28 3:11:09 06-15-16:10:19 1862033.0 0.8821 /project/shefflab/data//guertin/fastq/H9_DMSO_rep3_PE2.fastq.gz H9_treated_PRO-seq_1 H9 treated PRO-seq 200 nM romidepsin PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep1_PE1.fastq.gz H9_200nM_romidepsin_rep1 111300168 111300168 43631018.0 25201427.0 45.2855 58239430 47.67 20 1.158 6099206.0 10.47 44081295 26072183 18009111.5 30.92 16.18 3.41 655778 38 3099922541 1.0 9869335.0 9869335.0 7715519 53.0 17.1 2710.39 PAIRED hg38 62.8 0.4 0.38 1.19 3:10:12 06-15-10:27:30 2891628.0 0.8094 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep1_PE2.fastq.gz H9_treated_PRO-seq_2 H9 treated PRO-seq 200 nM romidepsin PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep2_PE1.fastq.gz H9_200nM_romidepsin_rep2 114083518 114083518 43984199.0 27614116.0 48.4104 57348074 49.73 20 1.0037 5458620.0 9.52 44741250 25860518 18880731.5 32.92 16.55 3.37 670904 38 3099922541 1.0 10123508.0 10123508.0 6731776 57.4 16.5 2737.32 PAIRED hg38 59.52 0.4 0.37 1.16 3:15:23 06-15-10:32:40 2388789.0 0.8189 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep2_PE2.fastq.gz H9_treated_PRO-seq_3 H9 treated PRO-seq 200 nM romidepsin PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep3_PE1.fastq.gz H9_200nM_romidepsin_rep3 120377388 120377388 46004533.0 26667722.0 44.3069 64640918 46.3 20 0.9116 6696846.0 10.36 50176577 29080016 21096561.0 32.64 17.53 3.98 667197 38 3099922541 1.0 11412874.5 11412874.5 7400125 60.1 17.8 2905.11 PAIRED hg38 63.1 0.4 0.38 1.1 3:16:06 06-15-10:33:24 4932446.0 0.7916 /project/shefflab/data//guertin/fastq/H9_200nM_romidepsin_rep3_PE2.fastq.gz H9_PRO-seq_10 10% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_10pct_PE1.fastq.gz H9_PRO-seq_10pct 11560826 11560826 4579820.0 2857948.0 49.4419 5661748 51.03 20 1.033 583234.0 10.3 4366101 2551719 1814382.0 32.05 15.69 1.54 83974 38 3099922541 1.0 972859.0 972859.0 667337 33.6 12.2 249.31 PAIRED hg38 33.58 0.39 0.36 1.34 0:36:56 06-14-21:55:30 81668.0 0.8545 /project/shefflab/data//guertin/fastq/H9_PRO-seq_10pct_PE2.fastq.gz H9_PRO-seq_20 20% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_20pct_PE1.fastq.gz H9_PRO-seq_20pct 23139336 23139336 9167377.0 5720857.0 49.447 11330814 51.03 20 1.0309 1164952.0 10.28 8742257 5108893 3633363.5 32.07 15.7 1.77 168231 38 3099922541 1.0 1948437.5 1948437.5 1333631 33.4 12.1 492.8 PAIRED hg38 33.2 0.39 0.36 1.31 0:36:25 06-14-21:54:59 233822.0 0.8521 /project/shefflab/data//guertin/fastq/H9_PRO-seq_20pct_PE2.fastq.gz H9_PRO-seq_30 30% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE1.fastq.gz H9_PRO-seq_30pct 34718962 34718962 13756701.0 8586429.0 49.4625 16996174 51.05 20 1.0316 1748068.0 10.29 13112915 7664259 5448656.5 32.06 15.69 1.96 251868 38 3099922541 1.0 2922148.5 2922148.5 2000641 33.4 12.2 732.68 PAIRED hg38 32.88 0.39 0.36 1.3 0:23:20 06-14-21:41:53 439732.0 0.8535 /project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE2.fastq.gz H9_PRO-seq_40 40% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE1.fastq.gz H9_PRO-seq_40pct 46292984 46292984 18342898.0 11448553.0 49.4613 22663440 51.04 20 1.0318 2331094.0 10.29 17485980 10220292 7265688.5 32.06 15.7 2.14 336077 38 3099922541 1.0 3896460.0 3896460.0 2667586 33.6 12.3 971.29 PAIRED hg38 33.24 0.39 0.36 1.29 1:44:21 06-15-09:01:38 691509.0 0.8539 /project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE2.fastq.gz H9_PRO-seq_50 50% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE1.fastq.gz H9_PRO-seq_50pct 57859902 57859902 22925851.0 14307341.0 49.4551 28328462 51.04 20 1.0308 2915278.0 10.29 21857551 12774487 9083064.0 32.06 15.7 2.31 420662 38 3099922541 1.0 4870901.0 4870901.0 3332293 33.8 12.3 1207.83 PAIRED hg38 33.39 0.39 0.36 1.29 1:38:18 06-15-08:55:36 987746.0 0.8538 /project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE2.fastq.gz H9_PRO-seq_60 60% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_60pct_PE1.fastq.gz H9_PRO-seq_60pct 69434420 69434420 27510738.0 17169444.0 49.4551 33995624 51.04 20 1.0317 3496780.0 10.29 26231527 15331637 10899890.0 32.06 15.7 2.48 504617 38 3099922541 1.0 5845127.5 5845127.5 3999373 33.8 12.3 1443.18 PAIRED hg38 33.82 0.39 0.36 1.29 1:58:11 06-15-09:15:29 1324320.0 0.8538 /project/shefflab/data//guertin/fastq/H9_PRO-seq_60pct_PE2.fastq.gz H9_PRO-seq_70 70% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_70pct_PE1.fastq.gz H9_PRO-seq_70pct 81008246 81008246 32096850.0 20028832.0 49.4489 39667362 51.03 20 1.0311 4079266.0 10.28 30608447 17889191 12719256.0 32.06 15.7 2.64 589030 38 3099922541 1.0 6820641.5 6820641.5 4666787 33.8 12.3 1677.91 PAIRED hg38 33.69 0.39 0.36 1.29 2:08:52 06-15-09:26:10 1700774.0 0.8537 /project/shefflab/data//guertin/fastq/H9_PRO-seq_70pct_PE2.fastq.gz H9_PRO-seq_80 80% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE1.fastq.gz H9_PRO-seq_80pct 92574794 92574794 36677941.0 22889260.0 49.4503 45330726 51.03 20 1.0312 4661884.0 10.28 34979488 20444644 14534843.5 32.06 15.7 2.8 672784 38 3099922541 1.0 7794054.0 7794054.0 5331336 33.8 12.3 1912.05 PAIRED hg38 33.72 0.39 0.36 1.29 2:39:05 06-15-09:56:30 2112480.0 0.8537 /project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE2.fastq.gz H9_PRO-seq_90 90% subset H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE1.fastq.gz H9_PRO-seq_90pct 104146252 104146252 41262698.0 25749458.0 49.4487 50996838 51.03 20 1.0318 5245576.0 10.29 39350499 23000545 16349954.5 32.06 15.7 2.95 756629 38 3099922541 1.0 8767451.5 8767451.5 5998097 33.8 12.3 2146.02 PAIRED hg38 33.96 0.39 0.36 1.29 3:00:51 06-15-10:18:16 2562794.0 0.8542 /project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE2.fastq.gz H9_PRO-seq_100 100% H9 PRO-seq 2 DMSO PRO human PAIRED 8 /project/shefflab/data//guertin/fastq/H9_PRO-seq_100pct_PE1.fastq.gz H9_PRO-seq_100pct 115714026 115714026 45847892.0 28610139.0 49.4497 56658510 51.04 20 1.0321 5827176.0 10.28 43719896 25554169 18165727.0 32.06 15.7 3.11 840435 38 3099922541 1.0 9741100.0 9741100.0 6664276 33.8 12.3 2754.18 PAIRED hg38 34.0 0.39 0.36 1.29 3:09:22 06-15-10:26:47 3047417.0 0.854 /project/shefflab/data//guertin/fastq/H9_PRO-seq_100pct_PE2.fastq.gz