FastQCFastQC Report
Mon 15 Jun 2020
H9_treated_PRO-seq_3_R2_trimmed.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameH9_treated_PRO-seq_3_R2_trimmed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34114197
Sequences flagged as poor quality0
Sequence length10-30
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNN9780712.86704975057745No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC6480261.8995786417015765No Hit
CGCGGGCCCAGAAGCGCAGCGACAGCCTC717060.2101940139467448No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN426660.12506816443605576No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTT415140.12169127123232595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)