Basic Statistics
Measure | Value |
---|---|
Filename | tutorial_R1_processed.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 497796 |
Sequences flagged as poor quality | 0 |
Sequence length | 18-30 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCGAATCCTAACCACTAGACCACCAGGGA | 612 | 0.12294192801870646 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCATT | 110 | 0.0 | 21.697113 | 15 |
ATCATTA | 120 | 0.0 | 19.045147 | 16 |
CATCGAT | 35 | 0.0063663376 | 18.819752 | 24 |
ACGCGGT | 50 | 1.482526E-5 | 18.68293 | 7 |
CCGAACC | 35 | 0.0076341005 | 18.236803 | 22 |
ACCGAGA | 130 | 0.0 | 17.064423 | 10 |
CGGTCTG | 55 | 3.3671233E-5 | 16.982775 | 10 |
AGGATCA | 140 | 0.0 | 16.768797 | 13 |
CGGAAGG | 140 | 0.0 | 16.67951 | 9 |
CACCGAG | 140 | 0.0 | 16.67951 | 9 |
ATGGATC | 50 | 3.1313632E-4 | 16.349207 | 6 |
GGATCAT | 140 | 0.0 | 16.055218 | 14 |
GCGGAAG | 140 | 0.0 | 15.847128 | 8 |
TCGGGCC | 55 | 5.163341E-4 | 15.309018 | 16 |
TGCGGAA | 145 | 0.0 | 15.300675 | 7 |
GCACCGA | 145 | 0.0 | 15.300675 | 8 |
GGTCCAA | 65 | 8.73694E-5 | 15.191098 | 19 |
ACCTGCG | 150 | 0.0 | 14.792139 | 4 |
ATCGCAG | 60 | 7.428703E-4 | 14.592059 | 20 |
GATCGCA | 85 | 3.5939302E-6 | 14.520903 | 19 |