FastQCFastQC Report
Wed 27 Nov 2019
tutorial_R1_processed.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametutorial_R1_processed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497796
Sequences flagged as poor quality0
Sequence length18-30
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAATCCTAACCACTAGACCACCAGGGA6120.12294192801870646No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCATT1100.021.69711315
ATCATTA1200.019.04514716
CATCGAT350.006366337618.81975224
ACGCGGT501.482526E-518.682937
CCGAACC350.007634100518.23680322
ACCGAGA1300.017.06442310
CGGTCTG553.3671233E-516.98277510
AGGATCA1400.016.76879713
CGGAAGG1400.016.679519
CACCGAG1400.016.679519
ATGGATC503.1313632E-416.3492076
GGATCAT1400.016.05521814
GCGGAAG1400.015.8471288
TCGGGCC555.163341E-415.30901816
TGCGGAA1450.015.3006757
GCACCGA1450.015.3006758
GGTCCAA658.73694E-515.19109819
ACCTGCG1500.014.7921394
ATCGCAG607.428703E-414.59205920
GATCGCA853.5939302E-614.52090319