Sample name: H9_treated_PRO-seq_3
Looper stats summary
sample_name |
H9_treated_PRO-seq_3 |
sample_desc |
H9 treated PRO-seq |
treatment |
200 nM romidepsin |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
read2 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
srr |
H9_200nM_romidepsin_rep3 |
File_mb |
2905.11 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
120377388 |
Fastq_reads |
120377388 |
Reads_with_adapter |
46004533.0 |
Uninformative_adapter_reads |
26667722.0 |
Duplicate_reads |
4932446.0 |
Pct_uninformative_adapter_reads |
44.3069 |
Trimmed_reads |
64640918 |
Trim_loss_rate |
46.3 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
0.9116 |
Aligned_reads_human_rDNA |
6696846.0 |
Alignment_rate_human_rDNA |
10.36 |
Mapped_reads |
50176577 |
QC_filtered_reads |
29080016 |
Aligned_reads |
21096561.0 |
Alignment_rate |
32.64 |
Total_efficiency |
17.53 |
Read_depth |
3.98 |
Mitochondrial_reads |
667197 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.7916 |
NRF |
1.0 |
PBC1 |
11412874.5 |
PBC2 |
11412874.5 |
Unmapped_reads |
7400125 |
TSS_coding_score |
60.1 |
TSS_non-coding_score |
17.8 |
Pause_index |
63.1 |
Plus_FRiP |
0.4 |
Minus_FRiP |
0.38 |
mRNA_contamination |
1.1 |
Time |
3:16:06 |
Success |
06-15-10:33:24 |