Sample name: HEK_ARF_PRO-seq
Looper stats summary
sample_name |
HEK_ARF_PRO-seq |
sample_desc |
HEK w/ osTIR1, ZNF143AID, ARF PRO-seq |
treatment |
Auxin |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/SRR8608070_PE1.fastq.gz |
read2 |
/project/shefflab/data//guertin/fastq/SRR8608070_PE2.fastq.gz |
srr |
SRR8608070 |
File_mb |
1302.45 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
53049272 |
Fastq_reads |
53049272 |
Reads_with_adapter |
21262101.0 |
Uninformative_adapter_reads |
8863359.0 |
Duplicate_reads |
778059.0 |
Pct_uninformative_adapter_reads |
33.4156 |
Trimmed_reads |
32625384 |
Trim_loss_rate |
38.5 |
Peak_adapter_insertion_size |
17 |
Degradation_ratio |
1.349 |
Aligned_reads_human_rDNA |
3622152.0 |
Alignment_rate_human_rDNA |
11.1 |
Mapped_reads |
24911965 |
QC_filtered_reads |
15309473 |
Aligned_reads |
9602492.0 |
Alignment_rate |
29.43 |
Total_efficiency |
18.1 |
Read_depth |
2.05 |
Mitochondrial_reads |
252493 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.9164 |
NRF |
1.0 |
PBC1 |
5434839.0 |
PBC2 |
5434839.0 |
Unmapped_reads |
3997391 |
TSS_coding_score |
18.5 |
TSS_non-coding_score |
2.4 |
Pause_index |
11.57 |
Plus_FRiP |
0.42 |
Minus_FRiP |
0.39 |
mRNA_contamination |
1.29 |
Time |
1:51:34 |
Success |
06-15-09:08:45 |