Sample name: HEK_PRO-seq
Looper stats summary
sample_name |
HEK_PRO-seq |
sample_desc |
HEK w/ osTIR1, ZNF143AID PRO-seq |
treatment |
Auxin |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/SRR8608074_PE1.fastq.gz |
read2 |
/project/shefflab/data//guertin/fastq/SRR8608074_PE2.fastq.gz |
srr |
SRR8608074 |
File_mb |
1337.94 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
51533198 |
Fastq_reads |
51533198 |
Reads_with_adapter |
16626152.0 |
Uninformative_adapter_reads |
5380555.0 |
Duplicate_reads |
916082.0 |
Pct_uninformative_adapter_reads |
20.8819 |
Trimmed_reads |
40207164 |
Trim_loss_rate |
21.98 |
Peak_adapter_insertion_size |
37 |
Degradation_ratio |
0.5783 |
Aligned_reads_human_rDNA |
4230222.0 |
Alignment_rate_human_rDNA |
10.52 |
Mapped_reads |
33104378 |
QC_filtered_reads |
18769818 |
Aligned_reads |
14334559.5 |
Alignment_rate |
35.65 |
Total_efficiency |
27.82 |
Read_depth |
2.41 |
Mitochondrial_reads |
325556 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.9099 |
NRF |
1.0 |
PBC1 |
7591734.5 |
PBC2 |
7591734.5 |
Unmapped_reads |
2807990 |
TSS_coding_score |
16.0 |
TSS_non-coding_score |
2.4 |
Pause_index |
10.23 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.37 |
mRNA_contamination |
1.25 |
Time |
2:14:20 |
Success |
06-15-09:31:31 |