Sample name: K562_GRO-seq
Looper stats summary
| sample_name |
K562_GRO-seq |
| sample_desc |
K562 GRO-seq |
| treatment |
none |
| protocol |
GRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//sra_fastq/SRR1552484.fastq.gz |
| srr |
SRR1552484 |
| Raw_reads |
30363736 |
| Fastq_reads |
30363736 |
| Reads_with_adapter |
22296806.0 |
| Uninformative_adapter_reads |
1041369.0 |
| Pct_uninformative_adapter_reads |
3.4296 |
| Trimmed_reads |
29322367 |
| Trim_loss_rate |
3.43 |
| Peak_adapter_insertion_size |
22 |
| Degradation_ratio |
0.7189 |
| Aligned_reads_human_rDNA |
4309471.0 |
| Alignment_rate_human_rDNA |
14.7 |
| Mapped_reads |
22899670 |
| QC_filtered_reads |
4468262 |
| Aligned_reads |
18431408 |
| Alignment_rate |
62.86 |
| Total_efficiency |
60.7 |
| Read_depth |
2.65 |
| Mitochondrial_reads |
843399 |
| Maximum_read_length |
50 |
| Genome_size |
3099922541 |
| NRF |
0.7 |
| PBC1 |
0.86 |
| PBC2 |
8.69 |
| Unmapped_reads |
2113226 |
| TSS_coding_score |
23.9 |
| TSS_non-coding_score |
8.6 |
| File_mb |
1322.25 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
10.74 |
| Plus_FRiP |
0.34 |
| Minus_FRiP |
0.32 |
| mRNA_contamination |
1.33 |
| Time |
0:20:51 |
| Success |
06-14-21:34:52 |
