Sample name: K562_PRO-seq_04
Looper stats summary
sample_name |
K562_PRO-seq_04 |
sample_desc |
4% subsample of K562 PRO-seq |
treatment |
4% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_4pct.fastq.gz |
srr |
K562_PRO_4pct |
Raw_reads |
19858924 |
Fastq_reads |
19858924 |
Reads_with_adapter |
16916658.0 |
Uninformative_adapter_reads |
497565.0 |
Pct_uninformative_adapter_reads |
2.5055 |
Trimmed_reads |
19361359 |
Trim_loss_rate |
2.51 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2307 |
Aligned_reads_human_rDNA |
1787129.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
17357618 |
QC_filtered_reads |
1866999 |
Aligned_reads |
15490619 |
Alignment_rate |
80.01 |
Total_efficiency |
78.0 |
Read_depth |
2.67 |
Mitochondrial_reads |
365645 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.91 |
PBC1 |
0.96 |
PBC2 |
27.36 |
Unmapped_reads |
216612 |
TSS_coding_score |
14.0 |
TSS_non-coding_score |
5.8 |
File_mb |
1485.53 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.66 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.42 |
Time |
0:22:23 |
Success |
06-14-21:28:35 |