Sample name: K562_PRO-seq_08
Looper stats summary
sample_name |
K562_PRO-seq_08 |
sample_desc |
8% subsample of K562 PRO-seq |
treatment |
8% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_8pct.fastq.gz |
srr |
K562_PRO_8pct |
Raw_reads |
39716621 |
Fastq_reads |
39716621 |
Reads_with_adapter |
33831973.0 |
Uninformative_adapter_reads |
995532.0 |
Pct_uninformative_adapter_reads |
2.5066 |
Trimmed_reads |
38721089 |
Trim_loss_rate |
2.51 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2313 |
Aligned_reads_human_rDNA |
3573907.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
34714884 |
QC_filtered_reads |
3735729 |
Aligned_reads |
30979155 |
Alignment_rate |
80.01 |
Total_efficiency |
78.0 |
Read_depth |
3.98 |
Mitochondrial_reads |
731070 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.84 |
PBC1 |
0.92 |
PBC2 |
16.03 |
Unmapped_reads |
432298 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
File_mb |
2954.27 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.59 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.41 |
Time |
0:26:19 |
Success |
06-14-21:35:23 |