Sample name: K562_PRO-seq_100
Looper stats summary
sample_name |
K562_PRO-seq_100 |
sample_desc |
Unsampled K562 PRO-seq |
treatment |
none |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
['/project/shefflab/data//sra_fastq/SRR1554311.fastq.gz', '/project/shefflab/data//sra_fastq/SRR1554312.fastq.gz'] |
srr |
SRR155431[1-2] |
Raw_reads |
496581677 |
Fastq_reads |
496581677 |
Reads_with_adapter |
423059183.0 |
Uninformative_adapter_reads |
12437983.0 |
Pct_uninformative_adapter_reads |
2.5047 |
Trimmed_reads |
484143694 |
Trim_loss_rate |
2.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2312 |
Aligned_reads_human_rDNA |
44680364.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
434069790 |
QC_filtered_reads |
46741044 |
Aligned_reads |
387328746 |
Alignment_rate |
80.0 |
Total_efficiency |
78.0 |
Read_depth |
29.61 |
Mitochondrial_reads |
9149071 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.28 |
PBC1 |
0.54 |
PBC2 |
3.89 |
Unmapped_reads |
5393540 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
File_mb |
38578.5 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.96 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.37 |
Time |
2:23:44 |
Success |
06-14-23:34:32 |