Sample name: K562_PRO-seq_30
Looper stats summary
sample_name |
K562_PRO-seq_30 |
sample_desc |
30% subsample of K562 PRO-seq |
treatment |
30% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_30pct.fastq.gz |
srr |
K562_PRO_30pct |
File_mb |
10969.75 |
Read_type |
SINGLE |
Genome |
hg38 |
Raw_reads |
148988721 |
Fastq_reads |
148988721 |
Reads_with_adapter |
126928151.0 |
Uninformative_adapter_reads |
3729909.0 |
Pct_uninformative_adapter_reads |
2.5035 |
Trimmed_reads |
145258812 |
Trim_loss_rate |
2.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2312 |
Aligned_reads_human_rDNA |
13404967.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
130234299 |
QC_filtered_reads |
14019843 |
Aligned_reads |
116214456 |
Alignment_rate |
80.01 |
Total_efficiency |
78.0 |
Read_depth |
10.45 |
Mitochondrial_reads |
2744825 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.6 |
PBC1 |
0.79 |
PBC2 |
6.54 |
Unmapped_reads |
1619546 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
Pause_index |
10.73 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.38 |
Time |
4:32:19 |
Success |
06-15-11:43:19 |