Sample name: K562_RNA-seq_20
Looper stats summary
| sample_name |
K562_RNA-seq_20 |
| sample_desc |
80% K562 PRO-seq + 20% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_20pctRNA.fastq.gz |
| srr |
K562_20pctRNA |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
52676382.0 |
| Uninformative_adapter_reads |
1401144.0 |
| Pct_uninformative_adapter_reads |
2.0016 |
| Trimmed_reads |
68598856 |
| Trim_loss_rate |
2.0 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.231 |
| Aligned_reads_human_rDNA |
5362282.0 |
| Alignment_rate_human_rDNA |
7.82 |
| Mapped_reads |
60323103 |
| QC_filtered_reads |
7805805 |
| Aligned_reads |
52517298 |
| Alignment_rate |
76.56 |
| Total_efficiency |
75.02 |
| Read_depth |
6.01 |
| Mitochondrial_reads |
1870021 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.77 |
| PBC1 |
0.9 |
| PBC2 |
12.6 |
| Unmapped_reads |
2913471 |
| TSS_coding_score |
16.0 |
| TSS_non-coding_score |
5.2 |
| File_mb |
5645.61 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
9.34 |
| Plus_FRiP |
0.36 |
| Minus_FRiP |
0.35 |
| mRNA_contamination |
2.46 |
| Time |
0:33:30 |
| Success |
06-14-21:44:47 |
