Sample name: K562_RNA-seq_30
Looper stats summary
sample_name |
K562_RNA-seq_30 |
sample_desc |
70% K562 PRO-seq + 30% K562 RNA-seq |
treatment |
70M total reads |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_30pctRNA.fastq.gz |
srr |
K562_30pctRNA |
Raw_reads |
70000000 |
Fastq_reads |
70000000 |
Reads_with_adapter |
49200456.0 |
Uninformative_adapter_reads |
1225550.0 |
Pct_uninformative_adapter_reads |
1.7508 |
Trimmed_reads |
68774450 |
Trim_loss_rate |
1.75 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.231 |
Aligned_reads_human_rDNA |
4894873.0 |
Alignment_rate_human_rDNA |
7.12 |
Mapped_reads |
59888336 |
QC_filtered_reads |
8412839 |
Aligned_reads |
51475497 |
Alignment_rate |
74.85 |
Total_efficiency |
73.54 |
Read_depth |
6.15 |
Mitochondrial_reads |
2160789 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.77 |
PBC1 |
0.9 |
PBC2 |
13.32 |
Unmapped_reads |
3991241 |
TSS_coding_score |
16.3 |
TSS_non-coding_score |
4.9 |
File_mb |
5620.96 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
8.95 |
Plus_FRiP |
0.37 |
Minus_FRiP |
0.36 |
mRNA_contamination |
2.97 |
Time |
0:36:29 |
Success |
06-14-21:47:46 |