Sample name: K562_RNA-seq_60
Looper stats summary
| sample_name |
K562_RNA-seq_60 |
| sample_desc |
40% K562 PRO-seq + 60% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_60pctRNA.fastq.gz |
| srr |
K562_60pctRNA |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
38768961.0 |
| Uninformative_adapter_reads |
700276.0 |
| Pct_uninformative_adapter_reads |
1.0004 |
| Trimmed_reads |
69299724 |
| Trim_loss_rate |
1.0 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2309 |
| Aligned_reads_human_rDNA |
3492589.0 |
| Alignment_rate_human_rDNA |
5.04 |
| Mapped_reads |
58587924 |
| QC_filtered_reads |
10244576 |
| Aligned_reads |
48343348 |
| Alignment_rate |
69.76 |
| Total_efficiency |
69.06 |
| Read_depth |
6.87 |
| Mitochondrial_reads |
3031668 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.69 |
| PBC1 |
0.89 |
| PBC2 |
14.34 |
| Unmapped_reads |
7219211 |
| TSS_coding_score |
17.4 |
| TSS_non-coding_score |
4.2 |
| File_mb |
5477.44 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
8.19 |
| Plus_FRiP |
0.38 |
| Minus_FRiP |
0.38 |
| mRNA_contamination |
4.92 |
| Time |
0:32:30 |
| Success |
06-14-21:44:18 |
