Sample name: K562_RNA-seq_80
Looper stats summary
sample_name |
K562_RNA-seq_80 |
sample_desc |
20% K562 PRO-seq + 80% K562 RNA-seq |
treatment |
70M total reads |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_80pctRNA.fastq.gz |
srr |
K562_80pctRNA |
File_mb |
5315.52 |
Read_type |
SINGLE |
Genome |
hg38 |
Raw_reads |
70000000 |
Fastq_reads |
70000000 |
Reads_with_adapter |
31815025.0 |
Uninformative_adapter_reads |
349949.0 |
Pct_uninformative_adapter_reads |
0.4999 |
Trimmed_reads |
69650051 |
Trim_loss_rate |
0.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2308 |
Aligned_reads_human_rDNA |
2559080.0 |
Alignment_rate_human_rDNA |
3.67 |
Mapped_reads |
57718557 |
QC_filtered_reads |
11466593 |
Aligned_reads |
46251964 |
Alignment_rate |
66.41 |
Total_efficiency |
66.07 |
Read_depth |
7.92 |
Mitochondrial_reads |
3613062 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.6 |
PBC1 |
0.86 |
PBC2 |
12.89 |
Unmapped_reads |
9372414 |
TSS_coding_score |
18.1 |
TSS_non-coding_score |
3.4 |
Pause_index |
7.77 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.39 |
mRNA_contamination |
7.26 |
Time |
2:18:35 |
Success |
06-15-09:35:45 |