Sample name: K562_RNA-seq_90
Looper stats summary
sample_name |
K562_RNA-seq_90 |
sample_desc |
10% K562 PRO-seq + 90% K562 RNA-seq |
treatment |
70M total reads |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_90pctRNA.fastq.gz |
srr |
K562_90pctRNA |
File_mb |
5212.18 |
Read_type |
SINGLE |
Genome |
hg38 |
Raw_reads |
70000000 |
Fastq_reads |
70000000 |
Reads_with_adapter |
28335107.0 |
Uninformative_adapter_reads |
175101.0 |
Pct_uninformative_adapter_reads |
0.2501 |
Trimmed_reads |
69824899 |
Trim_loss_rate |
0.25 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2307 |
Aligned_reads_human_rDNA |
2091621.0 |
Alignment_rate_human_rDNA |
3.0 |
Mapped_reads |
57285710 |
QC_filtered_reads |
12079693 |
Aligned_reads |
45206017 |
Alignment_rate |
64.74 |
Total_efficiency |
64.58 |
Read_depth |
9.03 |
Mitochondrial_reads |
3902862 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.54 |
PBC1 |
0.83 |
PBC2 |
11.16 |
Unmapped_reads |
10447568 |
TSS_coding_score |
18.6 |
TSS_non-coding_score |
3.0 |
Pause_index |
7.62 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.4 |
mRNA_contamination |
9.16 |
Time |
2:09:26 |
Success |
06-15-09:26:37 |