FastQCFastQC Report
Mon 15 Jun 2020
H9_PRO-seq_50_R2_trimmed.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameH9_PRO-seq_50_R2_trimmed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15428325
Sequences flagged as poor quality0
Sequence length10-30
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNN4378352.8378647714512106No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC3551332.3018247282190387No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTT357850.2319435194682508No Hit
CGCGGGCCCAGAAGCGCAGCGACAGCCTC270020.17501575835354777No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN200790.13014374535148823No Hit

[OK]Adapter Content

Adapter graph