FastQCFastQC Report
Mon 15 Jun 2020
H9_PRO-seq_80_R1_processed.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameH9_PRO-seq_80_R1_processed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22665363
Sequences flagged as poor quality0
Sequence length10-38
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2617781.154969368900026No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNN1714000.7562199643570676No Hit
CAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA994570.4388061201578814No Hit
GGCACCCGAGAATTCCA969870.42790843455716987Illumina Small RNA Adapter 2 (100% over 17bp)
TTGAAAGTCAGCCCTCGACACAAGGGTTTGT783780.34580518300103996No Hit
GCACCCGAGAATTCCA606810.2677256922820958Illumina Small RNA Adapter 2 (100% over 16bp)
CGAGAATTCCA527250.23262367339980392Illumina Small RNA Adapter 2 (100% over 11bp)
CCGAGAATTCCA466100.20564418050573469Illumina Small RNA Adapter 2 (100% over 12bp)
ACCCGAGAATTCCA404920.17865145155627996Illumina Small RNA Adapter 2 (100% over 14bp)
CGGGTTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT284460.12550427716511756No Hit
CCCGAGAATTCCA256810.11330504611816719Illumina Small RNA Adapter 2 (100% over 13bp)

[OK]Adapter Content

Adapter graph