FastQCFastQC Report
Thu 11 Jun 2020
Jurkat_ChRO-seq_1_R1_processed.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameJurkat_ChRO-seq_1_R1_processed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32783879
Sequences flagged as poor quality0
Sequence length8-70
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTTTTTTTTTTCAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTCAGACGTGTGCTCTT445760.1359692670900841TruSeq Adapter, Index 4 (100% over 57bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)