Sample name: tutorial

Log file Pipeline profile Pipeline commands Stats summary file


Looper stats summary

sample_name tutorial
organism human
protocol PROSEQ
read_type paired
read1 tutorial_r1.fq.gz
read2 tutorial_r2.fq.gz
File_mb 50.42
Read_type paired
Genome hg38
Raw_reads 2000000
Fastq_reads 2000000
Trimmed_reads 497796
Trim_loss_rate 75.11
Aligned_reads_human_rDNA 5860.0
Alignment_rate_human_rDNA 1.18
Mapped_reads 431804
QC_filtered_reads 274898
Aligned_reads 156906.0
Alignment_rate 31.52
Total_efficiency 7.85
Read_depth 1.17
Mitochondrial_reads 5357
Maximum_read_length 30
NRF 1.0
PBC1 15975.0
PBC2 15975.0
Unmapped_reads 468224
TSS_Plus_Score 33.3
TSS_Minus_Score 4.3
Pause_index 228.97
Plus FRiP 0.07
Minus FRiP 0.07
mRNA_contamination 4.26
Time 0:09:52
Success 11-27-14:04:51

tutorial objects

Links
Figures
Fig.0 TSS enrichment
Fig.1 Pause index
Fig.2 Fragment distribution
Fig.3 Plus FRiF
Fig.4 Minus FRiF
Fig.5 mRNA contamination