Sample name: H9_PRO-seq_80
Looper stats summary
sample_name |
H9_PRO-seq_80 |
sample_desc |
80% subset H9 PRO-seq 2 |
treatment |
DMSO |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE... |
read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE... |
srr |
H9_PRO-seq_80pct |
File_mb |
1912.05 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
92574794 |
Fastq_reads |
92574794 |
Reads_with_adapter |
36677941.0 |
Uninformative_adapter_reads |
22889260.0 |
Duplicate_reads |
2112480.0 |
Pct_uninformative_adapter_reads |
49.4503 |
Trimmed_reads |
45330726 |
Trim_loss_rate |
51.03 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
1.0312 |
Aligned_reads_human_rDNA |
4661884.0 |
Alignment_rate_human_rDNA |
10.28 |
Mapped_reads |
34979488 |
QC_filtered_reads |
20444644 |
Aligned_reads |
14534843.5 |
Alignment_rate |
32.06 |
Total_efficiency |
15.7 |
Read_depth |
2.8 |
Mitochondrial_reads |
672784 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.8537 |
NRF |
1.0 |
PBC1 |
7794054.0 |
PBC2 |
7794054.0 |
Unmapped_reads |
5331336 |
TSS_coding_score |
33.8 |
TSS_non-coding_score |
12.3 |
Pause_index |
33.72 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.36 |
mRNA_contamination |
1.29 |
Time |
2:39:05 |
Success |
06-15-09:56:30 |