K562_PRO-seq_02
|
2% subsample of K562 PRO-seq |
2% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_2pct.fastq.gz |
K562_PRO_2pct |
9931075 |
9931075 |
8460719.0 |
248752.0 |
2.5048 |
9682323 |
2.5 |
34 |
0.2307 |
893235.0 |
9.23 |
8680538 |
933765 |
7746773 |
80.01 |
78.01 |
1.95 |
183336 |
100 |
3099922541 |
0.95 |
0.98 |
47.71 |
108550 |
14.1 |
5.7 |
746.84 |
SINGLE |
hg38 |
10.66 |
0.36 |
0.34 |
1.44 |
0:26:36 |
06-14-21:32:48 |
NA |
NA |
NA |
K562_PRO-seq_04
|
4% subsample of K562 PRO-seq |
4% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_4pct.fastq.gz |
K562_PRO_4pct |
19858924 |
19858924 |
16916658.0 |
497565.0 |
2.5055 |
19361359 |
2.51 |
34 |
0.2307 |
1787129.0 |
9.23 |
17357618 |
1866999 |
15490619 |
80.01 |
78.0 |
2.67 |
365645 |
100 |
3099922541 |
0.91 |
0.96 |
27.36 |
216612 |
14.0 |
5.8 |
1485.53 |
SINGLE |
hg38 |
10.66 |
0.36 |
0.34 |
1.42 |
0:22:23 |
06-14-21:28:35 |
NA |
NA |
NA |
K562_PRO-seq_06
|
6% subsample of K562 PRO-seq |
6% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_6pct.fastq.gz |
K562_PRO_6pct |
29786346 |
29786346 |
25373082.0 |
747032.0 |
2.508 |
29039314 |
2.51 |
34 |
0.2311 |
2680287.0 |
9.23 |
26034464 |
2801424 |
23233040 |
80.01 |
78.0 |
3.34 |
548203 |
100 |
3099922541 |
0.87 |
0.94 |
19.95 |
324563 |
13.9 |
5.8 |
2220.82 |
SINGLE |
hg38 |
10.67 |
0.36 |
0.34 |
1.41 |
0:27:19 |
06-14-21:33:32 |
NA |
NA |
NA |
K562_PRO-seq_08
|
8% subsample of K562 PRO-seq |
8% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_8pct.fastq.gz |
K562_PRO_8pct |
39716621 |
39716621 |
33831973.0 |
995532.0 |
2.5066 |
38721089 |
2.51 |
34 |
0.2313 |
3573907.0 |
9.23 |
34714884 |
3735729 |
30979155 |
80.01 |
78.0 |
3.98 |
731070 |
100 |
3099922541 |
0.84 |
0.92 |
16.03 |
432298 |
13.9 |
5.8 |
2954.27 |
SINGLE |
hg38 |
10.59 |
0.36 |
0.34 |
1.41 |
0:26:19 |
06-14-21:35:23 |
NA |
NA |
NA |
K562_PRO-seq_10
|
10% subsample of K562 PRO-seq |
10% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_10pct.fastq.gz |
K562_PRO_10pct |
49645278 |
49645278 |
42291028.0 |
1244198.0 |
2.5062 |
48401080 |
2.51 |
34 |
0.2312 |
4467182.0 |
9.23 |
43394061 |
4669173 |
38724888 |
80.01 |
78.0 |
4.6 |
914079 |
100 |
3099922541 |
0.81 |
0.91 |
13.6 |
539837 |
13.9 |
5.8 |
3686.04 |
SINGLE |
hg38 |
10.6 |
0.36 |
0.34 |
1.4 |
0:29:34 |
06-14-21:38:38 |
NA |
NA |
NA |
K562_PRO-seq_20
|
20% subsample of K562 PRO-seq |
20% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_20pct.fastq.gz |
K562_PRO_20pct |
99310774 |
99310774 |
84602654.0 |
2486025.0 |
2.5033 |
96824749 |
2.5 |
34 |
0.2311 |
8934644.0 |
9.23 |
86810990 |
9341224 |
77469766 |
80.01 |
78.01 |
7.58 |
1829855 |
100 |
3099922541 |
0.69 |
0.84 |
8.4 |
1079115 |
13.9 |
5.8 |
7335.34 |
SINGLE |
hg38 |
10.75 |
0.36 |
0.34 |
1.39 |
3:28:03 |
06-15-10:25:55 |
NA |
NA |
NA |
K562_PRO-seq_30
|
30% subsample of K562 PRO-seq |
30% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_30pct.fastq.gz |
K562_PRO_30pct |
148988721 |
148988721 |
126928151.0 |
3729909.0 |
2.5035 |
145258812 |
2.5 |
34 |
0.2312 |
13404967.0 |
9.23 |
130234299 |
14019843 |
116214456 |
80.01 |
78.0 |
10.45 |
2744825 |
100 |
3099922541 |
0.6 |
0.79 |
6.54 |
1619546 |
13.9 |
5.8 |
10969.75 |
SINGLE |
hg38 |
10.73 |
0.36 |
0.34 |
1.38 |
4:32:19 |
06-15-11:43:19 |
NA |
NA |
NA |
K562_PRO-seq_40
|
40% subsample of K562 PRO-seq |
40% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_40pct.fastq.gz |
K562_PRO_40pct |
198648534 |
198648534 |
169233215.0 |
4973679.0 |
2.5038 |
193674855 |
2.5 |
34 |
0.2312 |
17873691.0 |
9.23 |
173642751 |
18693246 |
154949505 |
80.0 |
78.0 |
13.26 |
3660275 |
100 |
3099922541 |
0.53 |
0.74 |
5.58 |
2158413 |
13.9 |
5.8 |
14593.59 |
SINGLE |
hg38 |
10.83 |
0.36 |
0.34 |
1.38 |
5:38:58 |
06-15-12:49:59 |
NA |
NA |
NA |
K562_PRO-seq_50
|
50% subsample of K562 PRO-seq |
50% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_50pct.fastq.gz |
K562_PRO_50pct |
248316549 |
248316549 |
211550349.0 |
6217636.0 |
2.5039 |
242098913 |
2.5 |
34 |
0.2313 |
22342476.0 |
9.23 |
217058791 |
23375045 |
193683746 |
80.0 |
78.0 |
16.03 |
4576683 |
100 |
3099922541 |
0.47 |
0.7 |
4.99 |
2697646 |
13.9 |
5.8 |
18213.9 |
SINGLE |
hg38 |
10.88 |
0.36 |
0.34 |
1.37 |
6:53:02 |
06-15-14:04:03 |
NA |
NA |
NA |
K562_PRO-seq_60
|
60% subsample of K562 PRO-seq |
60% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_60pct.fastq.gz |
K562_PRO_60pct |
297971266 |
297971266 |
253852065.0 |
7461091.0 |
2.504 |
290510175 |
2.5 |
34 |
0.2313 |
26810031.0 |
9.23 |
260464989 |
28049270 |
232415719 |
80.0 |
78.0 |
18.77 |
5490660 |
100 |
3099922541 |
0.42 |
0.66 |
4.61 |
3235155 |
13.9 |
5.8 |
21820.91 |
SINGLE |
hg38 |
10.88 |
0.36 |
0.34 |
1.37 |
7:21:47 |
06-15-14:32:49 |
NA |
NA |
NA |
K562_PRO-seq_70
|
70% subsample of K562 PRO-seq |
70% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_70pct.fastq.gz |
K562_PRO_70pct |
347627030 |
347627030 |
296156505.0 |
8705410.0 |
2.5042 |
338921620 |
2.5 |
34 |
0.2313 |
31276877.0 |
9.23 |
303870332 |
32723809 |
271146523 |
80.0 |
78.0 |
21.5 |
6405734 |
100 |
3099922541 |
0.38 |
0.63 |
4.34 |
3774411 |
13.9 |
5.8 |
25439.68 |
SINGLE |
hg38 |
10.88 |
0.36 |
0.34 |
1.37 |
1:47:12 |
06-14-22:57:22 |
NA |
NA |
NA |
K562_PRO-seq_80
|
80% subsample of K562 PRO-seq |
80% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_80pct.fastq.gz |
K562_PRO_80pct |
397272644 |
397272644 |
338450269.0 |
9949631.0 |
2.5045 |
387323013 |
2.5 |
34 |
0.2313 |
35748058.0 |
9.23 |
347261528 |
37392862 |
309868666 |
80.0 |
78.0 |
24.22 |
7320857 |
100 |
3099922541 |
0.34 |
0.6 |
4.14 |
4313427 |
13.9 |
5.8 |
29053.1 |
SINGLE |
hg38 |
10.91 |
0.36 |
0.34 |
1.37 |
2:01:34 |
06-14-23:11:45 |
NA |
NA |
NA |
K562_PRO-seq_90
|
90% subsample of K562 PRO-seq |
90% subsample |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_PRO_90pct.fastq.gz |
K562_PRO_90pct |
446930263 |
446930263 |
380755198.0 |
11194446.0 |
2.5047 |
435735817 |
2.5 |
34 |
0.2312 |
40216117.0 |
9.23 |
390665301 |
42066109 |
348599192 |
80.0 |
78.0 |
26.92 |
8235203 |
100 |
3099922541 |
0.31 |
0.57 |
4.0 |
4854399 |
13.9 |
5.8 |
32665.2 |
SINGLE |
hg38 |
10.94 |
0.36 |
0.34 |
1.37 |
1:59:42 |
06-14-23:10:30 |
NA |
NA |
NA |
K562_PRO-seq_100
|
Unsampled K562 PRO-seq |
none |
PRO |
human |
SINGLE |
0 |
['/project/shefflab/data//sra_fastq/SRR1554311.fastq.gz',... |
SRR155431[1-2] |
496581677 |
496581677 |
423059183.0 |
12437983.0 |
2.5047 |
484143694 |
2.5 |
34 |
0.2312 |
44680364.0 |
9.23 |
434069790 |
46741044 |
387328746 |
80.0 |
78.0 |
29.61 |
9149071 |
100 |
3099922541 |
0.28 |
0.54 |
3.89 |
5393540 |
13.9 |
5.8 |
38578.5 |
SINGLE |
hg38 |
10.96 |
0.36 |
0.34 |
1.37 |
2:23:44 |
06-14-23:34:32 |
NA |
NA |
NA |
K562_RNA-seq_0
|
100% K562 PRO-seq + 0% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_0pctRNA.fastq.gz |
K562_0pctRNA |
70000000 |
70000000 |
59632858.0 |
1752284.0 |
2.5033 |
68247716 |
2.5 |
34 |
0.2311 |
6298510.0 |
9.23 |
61188335 |
6585652 |
54602683 |
80.01 |
78.0 |
5.84 |
1289952 |
100 |
3099922541 |
0.76 |
0.88 |
10.64 |
760871 |
13.9 |
5.8 |
5665.7 |
SINGLE |
hg38 |
10.69 |
0.36 |
0.34 |
1.4 |
2:33:27 |
06-15-09:50:34 |
NA |
NA |
NA |
K562_RNA-seq_10
|
90% K562 PRO-seq + 10% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_10pctRNA.fastq.gz |
K562_10pctRNA |
70000000 |
70000000 |
56155013.0 |
1576345.0 |
2.2519 |
68423655 |
2.25 |
34 |
0.231 |
5831595.0 |
8.52 |
60754568 |
7195486 |
53559082 |
78.28 |
76.51 |
5.9 |
1579435 |
100 |
3099922541 |
0.77 |
0.89 |
11.77 |
1837492 |
15.7 |
5.5 |
5660.06 |
SINGLE |
hg38 |
9.88 |
0.36 |
0.34 |
1.97 |
0:37:46 |
06-14-21:49:02 |
NA |
NA |
NA |
K562_RNA-seq_20
|
80% K562 PRO-seq + 20% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_20pctRNA.fastq.gz |
K562_20pctRNA |
70000000 |
70000000 |
52676382.0 |
1401144.0 |
2.0016 |
68598856 |
2.0 |
34 |
0.231 |
5362282.0 |
7.82 |
60323103 |
7805805 |
52517298 |
76.56 |
75.02 |
6.01 |
1870021 |
100 |
3099922541 |
0.77 |
0.9 |
12.6 |
2913471 |
16.0 |
5.2 |
5645.61 |
SINGLE |
hg38 |
9.34 |
0.36 |
0.35 |
2.46 |
0:33:30 |
06-14-21:44:47 |
NA |
NA |
NA |
K562_RNA-seq_30
|
70% K562 PRO-seq + 30% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_30pctRNA.fastq.gz |
K562_30pctRNA |
70000000 |
70000000 |
49200456.0 |
1225550.0 |
1.7508 |
68774450 |
1.75 |
34 |
0.231 |
4894873.0 |
7.12 |
59888336 |
8412839 |
51475497 |
74.85 |
73.54 |
6.15 |
2160789 |
100 |
3099922541 |
0.77 |
0.9 |
13.32 |
3991241 |
16.3 |
4.9 |
5620.96 |
SINGLE |
hg38 |
8.95 |
0.37 |
0.36 |
2.97 |
0:36:29 |
06-14-21:47:46 |
NA |
NA |
NA |
K562_RNA-seq_40
|
60% K562 PRO-seq + 40% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_40pctRNA.fastq.gz |
K562_40pctRNA |
70000000 |
70000000 |
45723195.0 |
1050230.0 |
1.5003 |
68949770 |
1.5 |
34 |
0.2309 |
4427990.0 |
6.42 |
59454882 |
9022968 |
50431914 |
73.14 |
72.05 |
6.34 |
2452024 |
100 |
3099922541 |
0.75 |
0.9 |
13.91 |
5066898 |
16.6 |
5.0 |
5584.92 |
SINGLE |
hg38 |
8.63 |
0.37 |
0.36 |
3.53 |
0:32:36 |
06-14-21:44:23 |
NA |
NA |
NA |
K562_RNA-seq_50
|
50% K562 PRO-seq + 50% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_50pctRNA.fastq.gz |
K562_50pctRNA |
70000000 |
70000000 |
42246395.0 |
875215.0 |
1.2503 |
69124785 |
1.25 |
34 |
0.231 |
3959053.0 |
5.73 |
59023095 |
9634021 |
49389074 |
71.45 |
70.56 |
6.57 |
2741453 |
100 |
3099922541 |
0.73 |
0.89 |
14.29 |
6142637 |
17.0 |
4.6 |
5536.54 |
SINGLE |
hg38 |
8.38 |
0.38 |
0.37 |
4.15 |
0:35:54 |
06-14-21:47:41 |
NA |
NA |
NA |
K562_RNA-seq_60
|
40% K562 PRO-seq + 60% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_60pctRNA.fastq.gz |
K562_60pctRNA |
70000000 |
70000000 |
38768961.0 |
700276.0 |
1.0004 |
69299724 |
1.0 |
34 |
0.2309 |
3492589.0 |
5.04 |
58587924 |
10244576 |
48343348 |
69.76 |
69.06 |
6.87 |
3031668 |
100 |
3099922541 |
0.69 |
0.89 |
14.34 |
7219211 |
17.4 |
4.2 |
5477.44 |
SINGLE |
hg38 |
8.19 |
0.38 |
0.38 |
4.92 |
0:32:30 |
06-14-21:44:18 |
NA |
NA |
NA |
K562_RNA-seq_70
|
30% K562 PRO-seq + 70% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_70pctRNA.fastq.gz |
K562_70pctRNA |
70000000 |
70000000 |
35291630.0 |
524857.0 |
0.7498 |
69475143 |
0.75 |
34 |
0.2308 |
3025540.0 |
4.35 |
58152869 |
10854484 |
47298385 |
68.08 |
67.57 |
7.29 |
3321940 |
100 |
3099922541 |
0.65 |
0.88 |
13.92 |
8296734 |
17.7 |
3.9 |
5404.02 |
SINGLE |
hg38 |
7.99 |
0.39 |
0.38 |
5.92 |
2:18:47 |
06-15-09:35:58 |
NA |
NA |
NA |
K562_RNA-seq_80
|
20% K562 PRO-seq + 80% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_80pctRNA.fastq.gz |
K562_80pctRNA |
70000000 |
70000000 |
31815025.0 |
349949.0 |
0.4999 |
69650051 |
0.5 |
34 |
0.2308 |
2559080.0 |
3.67 |
57718557 |
11466593 |
46251964 |
66.41 |
66.07 |
7.92 |
3613062 |
100 |
3099922541 |
0.6 |
0.86 |
12.89 |
9372414 |
18.1 |
3.4 |
5315.52 |
SINGLE |
hg38 |
7.77 |
0.39 |
0.39 |
7.26 |
2:18:35 |
06-15-09:35:45 |
NA |
NA |
NA |
K562_RNA-seq_90
|
10% K562 PRO-seq + 90% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_90pctRNA.fastq.gz |
K562_90pctRNA |
70000000 |
70000000 |
28335107.0 |
175101.0 |
0.2501 |
69824899 |
0.25 |
34 |
0.2307 |
2091621.0 |
3.0 |
57285710 |
12079693 |
45206017 |
64.74 |
64.58 |
9.03 |
3902862 |
100 |
3099922541 |
0.54 |
0.83 |
11.16 |
10447568 |
18.6 |
3.0 |
5212.18 |
SINGLE |
hg38 |
7.62 |
0.39 |
0.4 |
9.16 |
2:09:26 |
06-15-09:26:37 |
NA |
NA |
NA |
K562_RNA-seq_100
|
0% K562 PRO-seq + 100% K562 RNA-seq |
70M total reads |
PRO |
human |
SINGLE |
0 |
/project/shefflab/data//guertin/fastq/K562_100pctRNA.fastq.gz |
K562_100pctRNA |
70000000 |
70000000 |
24858626.0 |
0.0 |
0.0 |
70000000 |
0.0 |
0 |
0.0 |
1624026.0 |
2.32 |
56850944 |
12689564 |
44161380 |
63.09 |
63.09 |
11.83 |
4192362 |
76 |
3099922541 |
0.47 |
0.79 |
8.82 |
11525030 |
19.1 |
2.5 |
5091.82 |
SINGLE |
hg38 |
7.79 |
0.4 |
0.41 |
12.77 |
2:07:14 |
06-15-09:24:25 |
NA |
NA |
NA |
K562_GRO-seq
|
K562 GRO-seq |
none |
GRO |
human |
SINGLE |
0 |
/project/shefflab/data//sra_fastq/SRR1552484.fastq.gz |
SRR1552484 |
30363736 |
30363736 |
22296806.0 |
1041369.0 |
3.4296 |
29322367 |
3.43 |
22 |
0.7189 |
4309471.0 |
14.7 |
22899670 |
4468262 |
18431408 |
62.86 |
60.7 |
2.65 |
843399 |
50 |
3099922541 |
0.7 |
0.86 |
8.69 |
2113226 |
23.9 |
8.6 |
1322.25 |
SINGLE |
hg38 |
10.74 |
0.34 |
0.32 |
1.33 |
0:20:51 |
06-14-21:34:52 |
NA |
NA |
NA |
HelaS3_GRO-seq
|
HelaS3 GRO-seq |
none |
GRO |
human |
SINGLE |
0 |
['/project/shefflab/data//sra_fastq/SRR1693611.fastq.gz',... |
SRR169361[1-2] |
72718941 |
72718941 |
22179715.0 |
0.0 |
0.0 |
72718941 |
0.0 |
0 |
0.0 |
40879756.0 |
56.22 |
21029691 |
6163527 |
14866164 |
20.44 |
20.44 |
2.34 |
1906316 |
51 |
3099922541 |
0.72 |
0.91 |
13.55 |
10809494 |
7.3 |
4.1 |
3550.33 |
SINGLE |
hg38 |
4.92 |
0.37 |
0.33 |
3.22 |
0:16:11 |
06-14-21:30:12 |
NA |
NA |
NA |
Jurkat_ChRO-seq_1
|
Jurkat ChRO-seq |
none |
PRO |
human |
SINGLE |
6 |
/project/shefflab/data//sra_fastq/SRR7616133.fastq.gz |
SRR7616133 |
37740511 |
37740511 |
34473620.0 |
2012355.0 |
5.3321 |
32783879 |
13.13 |
20 |
0.9566 |
3493243.0 |
10.66 |
28177350 |
6839271 |
21338079 |
65.09 |
56.54 |
3.87 |
4738 |
70 |
3099922541 |
0.38 |
0.64 |
3.39 |
1113286 |
55.1 |
12.6 |
1330.25 |
SINGLE |
hg38 |
42.69 |
0.36 |
0.34 |
1.19 |
0:19:54 |
06-14-21:34:30 |
14846147.0 |
0.7897 |
NA |
Jurkat_ChRO-seq_2
|
Jurkat ChRO-seq |
none |
PRO |
human |
SINGLE |
6 |
/project/shefflab/data//sra_fastq/SRR7616134.fastq.gz |
SRR7616134 |
49841170 |
49841170 |
42416468.0 |
223715.0 |
0.4489 |
48264585 |
3.16 |
39 |
0.4899 |
3950647.0 |
8.19 |
41878067 |
7874013 |
34004054 |
70.45 |
68.22 |
4.27 |
18250 |
70 |
3099922541 |
0.53 |
0.8 |
8.39 |
2435871 |
68.4 |
23.2 |
1914.91 |
SINGLE |
hg38 |
85.85 |
0.36 |
0.35 |
1.2 |
1:55:16 |
06-15-09:12:28 |
5764233.0 |
0.646 |
NA |
HEK_PRO-seq
|
HEK w/ osTIR1, ZNF143AID PRO-seq |
Auxin |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/SRR8608074_PE1.fastq.gz |
SRR8608074 |
51533198 |
51533198 |
16626152.0 |
5380555.0 |
20.8819 |
40207164 |
21.98 |
37 |
0.5783 |
4230222.0 |
10.52 |
33104378 |
18769818 |
14334559.5 |
35.65 |
27.82 |
2.41 |
325556 |
38 |
3099922541 |
1.0 |
7591734.5 |
7591734.5 |
2807990 |
16.0 |
2.4 |
1337.94 |
PAIRED |
hg38 |
10.23 |
0.39 |
0.37 |
1.25 |
2:14:20 |
06-15-09:31:31 |
916082.0 |
0.9099 |
/project/shefflab/data//guertin/fastq/SRR8608074_PE2.fastq.gz |
HEK_ARF_PRO-seq
|
HEK w/ osTIR1, ZNF143AID, ARF PRO-seq |
Auxin |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/SRR8608070_PE1.fastq.gz |
SRR8608070 |
53049272 |
53049272 |
21262101.0 |
8863359.0 |
33.4156 |
32625384 |
38.5 |
17 |
1.349 |
3622152.0 |
11.1 |
24911965 |
15309473 |
9602492.0 |
29.43 |
18.1 |
2.05 |
252493 |
38 |
3099922541 |
1.0 |
5434839.0 |
5434839.0 |
3997391 |
18.5 |
2.4 |
1302.45 |
PAIRED |
hg38 |
11.57 |
0.42 |
0.39 |
1.29 |
1:51:34 |
06-15-09:08:45 |
778059.0 |
0.9164 |
/project/shefflab/data//guertin/fastq/SRR8608070_PE2.fastq.gz |
H9_PRO-seq_1
|
H9 PRO-seq |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE1.fastq.gz |
H9_DMSO_rep1 |
97729860 |
97729860 |
34822522.0 |
17998987.0 |
36.8342 |
60442686 |
38.15 |
20 |
0.8896 |
5408680.0 |
8.95 |
48339851 |
27585022 |
20754829.0 |
34.34 |
21.24 |
3.26 |
674956 |
38 |
3099922541 |
1.0 |
10983354.0 |
10983354.0 |
6258301 |
26.7 |
10.1 |
2469.73 |
PAIRED |
hg38 |
26.45 |
0.38 |
0.36 |
1.23 |
2:50:51 |
06-15-15:50:01 |
3516802.0 |
0.8774 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE2.fastq.gz |
H9_PRO-seq_2
|
H9 PRO-seq |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep2_PE1.fastq.gz |
H9_DMSO_rep2 |
115714026 |
115714026 |
45847892.0 |
28610139.0 |
49.4497 |
56658510 |
51.04 |
20 |
1.0321 |
5827176.0 |
10.28 |
43719896 |
25554169 |
18165727.0 |
32.06 |
15.7 |
3.11 |
840435 |
38 |
3099922541 |
1.0 |
9741100.0 |
9741100.0 |
6664276 |
33.8 |
12.3 |
2754.18 |
PAIRED |
hg38 |
34.0 |
0.39 |
0.36 |
1.29 |
2:35:29 |
06-15-15:34:39 |
3047417.0 |
0.8541 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep2_PE2.fastq.gz |
H9_PRO-seq_3
|
H9 PRO-seq |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep3_PE1.fastq.gz |
H9_DMSO_rep3 |
92628962 |
92628962 |
34725419.0 |
18106301.0 |
39.0943 |
54838340 |
40.8 |
20 |
0.9769 |
5405874.0 |
9.86 |
43295089 |
25127415 |
18167674.5 |
33.13 |
19.61 |
2.98 |
711009 |
38 |
3099922541 |
1.0 |
9740520.5 |
9740520.5 |
5843431 |
28.6 |
10.5 |
2340.86 |
PAIRED |
hg38 |
27.32 |
0.39 |
0.36 |
1.28 |
3:11:09 |
06-15-16:10:19 |
1862033.0 |
0.8821 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep3_PE2.fastq.gz |
H9_treated_PRO-seq_1
|
H9 treated PRO-seq |
200 nM romidepsin |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_200nM_romidepsin_rep1 |
111300168 |
111300168 |
43631018.0 |
25201427.0 |
45.2855 |
58239430 |
47.67 |
20 |
1.158 |
6099206.0 |
10.47 |
44081295 |
26072183 |
18009111.5 |
30.92 |
16.18 |
3.41 |
655778 |
38 |
3099922541 |
1.0 |
9869335.0 |
9869335.0 |
7715519 |
53.0 |
17.1 |
2710.39 |
PAIRED |
hg38 |
62.8 |
0.4 |
0.38 |
1.19 |
3:10:12 |
06-15-10:27:30 |
2891628.0 |
0.8094 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_treated_PRO-seq_2
|
H9 treated PRO-seq |
200 nM romidepsin |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_200nM_romidepsin_rep2 |
114083518 |
114083518 |
43984199.0 |
27614116.0 |
48.4104 |
57348074 |
49.73 |
20 |
1.0037 |
5458620.0 |
9.52 |
44741250 |
25860518 |
18880731.5 |
32.92 |
16.55 |
3.37 |
670904 |
38 |
3099922541 |
1.0 |
10123508.0 |
10123508.0 |
6731776 |
57.4 |
16.5 |
2737.32 |
PAIRED |
hg38 |
59.52 |
0.4 |
0.37 |
1.16 |
3:15:23 |
06-15-10:32:40 |
2388789.0 |
0.8189 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_treated_PRO-seq_3
|
H9 treated PRO-seq |
200 nM romidepsin |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_200nM_romidepsin_rep3 |
120377388 |
120377388 |
46004533.0 |
26667722.0 |
44.3069 |
64640918 |
46.3 |
20 |
0.9116 |
6696846.0 |
10.36 |
50176577 |
29080016 |
21096561.0 |
32.64 |
17.53 |
3.98 |
667197 |
38 |
3099922541 |
1.0 |
11412874.5 |
11412874.5 |
7400125 |
60.1 |
17.8 |
2905.11 |
PAIRED |
hg38 |
63.1 |
0.4 |
0.38 |
1.1 |
3:16:06 |
06-15-10:33:24 |
4932446.0 |
0.7916 |
/project/shefflab/data//guertin/fastq/H9_200nM_romidepsin... |
H9_PRO-seq_10
|
10% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_10pct_PE... |
H9_PRO-seq_10pct |
11560826 |
11560826 |
4579820.0 |
2857948.0 |
49.4419 |
5661748 |
51.03 |
20 |
1.033 |
583234.0 |
10.3 |
4366101 |
2551719 |
1814382.0 |
32.05 |
15.69 |
1.54 |
83974 |
38 |
3099922541 |
1.0 |
972859.0 |
972859.0 |
667337 |
33.6 |
12.2 |
249.31 |
PAIRED |
hg38 |
33.58 |
0.39 |
0.36 |
1.34 |
0:36:56 |
06-14-21:55:30 |
81668.0 |
0.8545 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_10pct_PE... |
H9_PRO-seq_20
|
20% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_20pct_PE... |
H9_PRO-seq_20pct |
23139336 |
23139336 |
9167377.0 |
5720857.0 |
49.447 |
11330814 |
51.03 |
20 |
1.0309 |
1164952.0 |
10.28 |
8742257 |
5108893 |
3633363.5 |
32.07 |
15.7 |
1.77 |
168231 |
38 |
3099922541 |
1.0 |
1948437.5 |
1948437.5 |
1333631 |
33.4 |
12.1 |
492.8 |
PAIRED |
hg38 |
33.2 |
0.39 |
0.36 |
1.31 |
0:36:25 |
06-14-21:54:59 |
233822.0 |
0.8521 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_20pct_PE... |
H9_PRO-seq_30
|
30% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE... |
H9_PRO-seq_30pct |
34718962 |
34718962 |
13756701.0 |
8586429.0 |
49.4625 |
16996174 |
51.05 |
20 |
1.0316 |
1748068.0 |
10.29 |
13112915 |
7664259 |
5448656.5 |
32.06 |
15.69 |
1.96 |
251868 |
38 |
3099922541 |
1.0 |
2922148.5 |
2922148.5 |
2000641 |
33.4 |
12.2 |
732.68 |
PAIRED |
hg38 |
32.88 |
0.39 |
0.36 |
1.3 |
0:23:20 |
06-14-21:41:53 |
439732.0 |
0.8535 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE... |
H9_PRO-seq_40
|
40% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
H9_PRO-seq_40pct |
46292984 |
46292984 |
18342898.0 |
11448553.0 |
49.4613 |
22663440 |
51.04 |
20 |
1.0318 |
2331094.0 |
10.29 |
17485980 |
10220292 |
7265688.5 |
32.06 |
15.7 |
2.14 |
336077 |
38 |
3099922541 |
1.0 |
3896460.0 |
3896460.0 |
2667586 |
33.6 |
12.3 |
971.29 |
PAIRED |
hg38 |
33.24 |
0.39 |
0.36 |
1.29 |
1:44:21 |
06-15-09:01:38 |
691509.0 |
0.8539 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
H9_PRO-seq_50
|
50% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE... |
H9_PRO-seq_50pct |
57859902 |
57859902 |
22925851.0 |
14307341.0 |
49.4551 |
28328462 |
51.04 |
20 |
1.0308 |
2915278.0 |
10.29 |
21857551 |
12774487 |
9083064.0 |
32.06 |
15.7 |
2.31 |
420662 |
38 |
3099922541 |
1.0 |
4870901.0 |
4870901.0 |
3332293 |
33.8 |
12.3 |
1207.83 |
PAIRED |
hg38 |
33.39 |
0.39 |
0.36 |
1.29 |
1:38:18 |
06-15-08:55:36 |
987746.0 |
0.8538 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE... |
H9_PRO-seq_60
|
60% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_60pct_PE... |
H9_PRO-seq_60pct |
69434420 |
69434420 |
27510738.0 |
17169444.0 |
49.4551 |
33995624 |
51.04 |
20 |
1.0317 |
3496780.0 |
10.29 |
26231527 |
15331637 |
10899890.0 |
32.06 |
15.7 |
2.48 |
504617 |
38 |
3099922541 |
1.0 |
5845127.5 |
5845127.5 |
3999373 |
33.8 |
12.3 |
1443.18 |
PAIRED |
hg38 |
33.82 |
0.39 |
0.36 |
1.29 |
1:58:11 |
06-15-09:15:29 |
1324320.0 |
0.8538 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_60pct_PE... |
H9_PRO-seq_70
|
70% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_70pct_PE... |
H9_PRO-seq_70pct |
81008246 |
81008246 |
32096850.0 |
20028832.0 |
49.4489 |
39667362 |
51.03 |
20 |
1.0311 |
4079266.0 |
10.28 |
30608447 |
17889191 |
12719256.0 |
32.06 |
15.7 |
2.64 |
589030 |
38 |
3099922541 |
1.0 |
6820641.5 |
6820641.5 |
4666787 |
33.8 |
12.3 |
1677.91 |
PAIRED |
hg38 |
33.69 |
0.39 |
0.36 |
1.29 |
2:08:52 |
06-15-09:26:10 |
1700774.0 |
0.8537 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_70pct_PE... |
H9_PRO-seq_80
|
80% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE... |
H9_PRO-seq_80pct |
92574794 |
92574794 |
36677941.0 |
22889260.0 |
49.4503 |
45330726 |
51.03 |
20 |
1.0312 |
4661884.0 |
10.28 |
34979488 |
20444644 |
14534843.5 |
32.06 |
15.7 |
2.8 |
672784 |
38 |
3099922541 |
1.0 |
7794054.0 |
7794054.0 |
5331336 |
33.8 |
12.3 |
1912.05 |
PAIRED |
hg38 |
33.72 |
0.39 |
0.36 |
1.29 |
2:39:05 |
06-15-09:56:30 |
2112480.0 |
0.8537 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_80pct_PE... |
H9_PRO-seq_90
|
90% subset H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE... |
H9_PRO-seq_90pct |
104146252 |
104146252 |
41262698.0 |
25749458.0 |
49.4487 |
50996838 |
51.03 |
20 |
1.0318 |
5245576.0 |
10.29 |
39350499 |
23000545 |
16349954.5 |
32.06 |
15.7 |
2.95 |
756629 |
38 |
3099922541 |
1.0 |
8767451.5 |
8767451.5 |
5998097 |
33.8 |
12.3 |
2146.02 |
PAIRED |
hg38 |
33.96 |
0.39 |
0.36 |
1.29 |
3:00:51 |
06-15-10:18:16 |
2562794.0 |
0.8542 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE... |
H9_PRO-seq_100
|
100% H9 PRO-seq 2 |
DMSO |
PRO |
human |
PAIRED |
8 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_100pct_P... |
H9_PRO-seq_100pct |
115714026 |
115714026 |
45847892.0 |
28610139.0 |
49.4497 |
56658510 |
51.04 |
20 |
1.0321 |
5827176.0 |
10.28 |
43719896 |
25554169 |
18165727.0 |
32.06 |
15.7 |
3.11 |
840435 |
38 |
3099922541 |
1.0 |
9741100.0 |
9741100.0 |
6664276 |
33.8 |
12.3 |
2754.18 |
PAIRED |
hg38 |
34.0 |
0.39 |
0.36 |
1.29 |
3:09:22 |
06-15-10:26:47 |
3047417.0 |
0.854 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_100pct_P... |