Sample name: HelaS3_GRO-seq
Looper stats summary
| sample_name |
HelaS3_GRO-seq |
| sample_desc |
HelaS3 GRO-seq |
| treatment |
none |
| protocol |
GRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
['/project/shefflab/data//sra_fastq/SRR1693611.fastq.gz', '/project/shefflab/data//sra_fastq/SRR1693612.fastq.gz'] |
| srr |
SRR169361[1-2] |
| Raw_reads |
72718941 |
| Fastq_reads |
72718941 |
| Reads_with_adapter |
22179715.0 |
| Uninformative_adapter_reads |
0.0 |
| Pct_uninformative_adapter_reads |
0.0 |
| Trimmed_reads |
72718941 |
| Trim_loss_rate |
0.0 |
| Peak_adapter_insertion_size |
0 |
| Degradation_ratio |
0.0 |
| Aligned_reads_human_rDNA |
40879756.0 |
| Alignment_rate_human_rDNA |
56.22 |
| Mapped_reads |
21029691 |
| QC_filtered_reads |
6163527 |
| Aligned_reads |
14866164 |
| Alignment_rate |
20.44 |
| Total_efficiency |
20.44 |
| Read_depth |
2.34 |
| Mitochondrial_reads |
1906316 |
| Maximum_read_length |
51 |
| Genome_size |
3099922541 |
| NRF |
0.72 |
| PBC1 |
0.91 |
| PBC2 |
13.55 |
| Unmapped_reads |
10809494 |
| TSS_coding_score |
7.3 |
| TSS_non-coding_score |
4.1 |
| File_mb |
3550.33 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
4.92 |
| Plus_FRiP |
0.37 |
| Minus_FRiP |
0.33 |
| mRNA_contamination |
3.22 |
| Time |
0:16:11 |
| Success |
06-14-21:30:12 |
