Sample name: HelaS3_GRO-seq
Looper stats summary
sample_name |
HelaS3_GRO-seq |
sample_desc |
HelaS3 GRO-seq |
treatment |
none |
protocol |
GRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
['/project/shefflab/data//sra_fastq/SRR1693611.fastq.gz', '/project/shefflab/data//sra_fastq/SRR1693612.fastq.gz'] |
srr |
SRR169361[1-2] |
Raw_reads |
72718941 |
Fastq_reads |
72718941 |
Reads_with_adapter |
22179715.0 |
Uninformative_adapter_reads |
0.0 |
Pct_uninformative_adapter_reads |
0.0 |
Trimmed_reads |
72718941 |
Trim_loss_rate |
0.0 |
Peak_adapter_insertion_size |
0 |
Degradation_ratio |
0.0 |
Aligned_reads_human_rDNA |
40879756.0 |
Alignment_rate_human_rDNA |
56.22 |
Mapped_reads |
21029691 |
QC_filtered_reads |
6163527 |
Aligned_reads |
14866164 |
Alignment_rate |
20.44 |
Total_efficiency |
20.44 |
Read_depth |
2.34 |
Mitochondrial_reads |
1906316 |
Maximum_read_length |
51 |
Genome_size |
3099922541 |
NRF |
0.72 |
PBC1 |
0.91 |
PBC2 |
13.55 |
Unmapped_reads |
10809494 |
TSS_coding_score |
7.3 |
TSS_non-coding_score |
4.1 |
File_mb |
3550.33 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
4.92 |
Plus_FRiP |
0.37 |
Minus_FRiP |
0.33 |
mRNA_contamination |
3.22 |
Time |
0:16:11 |
Success |
06-14-21:30:12 |