Sample name: Jurkat_ChRO-seq_1
Looper stats summary
sample_name |
Jurkat_ChRO-seq_1 |
sample_desc |
Jurkat ChRO-seq |
treatment |
none |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
6 |
read1 |
/project/shefflab/data//sra_fastq/SRR7616133.fastq.gz |
srr |
SRR7616133 |
Raw_reads |
37740511 |
Fastq_reads |
37740511 |
Trimmed_reads |
32783879 |
Trim_loss_rate |
13.13 |
Reads_with_adapter |
34473620.0 |
Uninformative_adapter_reads |
2012355.0 |
Duplicate_reads |
14846147.0 |
Pct_uninformative_adapter_reads |
5.3321 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
0.9566 |
Aligned_reads_human_rDNA |
3493243.0 |
Alignment_rate_human_rDNA |
10.66 |
Mapped_reads |
28177350 |
QC_filtered_reads |
6839271 |
Aligned_reads |
21338079 |
Alignment_rate |
65.09 |
Total_efficiency |
56.54 |
Read_depth |
3.87 |
Mitochondrial_reads |
4738 |
Maximum_read_length |
70 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.7897 |
NRF |
0.38 |
PBC1 |
0.64 |
PBC2 |
3.39 |
Unmapped_reads |
1113286 |
TSS_coding_score |
55.1 |
TSS_non-coding_score |
12.6 |
File_mb |
1330.25 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
42.69 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.19 |
Time |
0:19:54 |
Success |
06-14-21:34:30 |