Sample name: K562_PRO-seq_06
Looper stats summary
sample_name |
K562_PRO-seq_06 |
sample_desc |
6% subsample of K562 PRO-seq |
treatment |
6% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_6pct.fastq.gz |
srr |
K562_PRO_6pct |
Raw_reads |
29786346 |
Fastq_reads |
29786346 |
Reads_with_adapter |
25373082.0 |
Uninformative_adapter_reads |
747032.0 |
Pct_uninformative_adapter_reads |
2.508 |
Trimmed_reads |
29039314 |
Trim_loss_rate |
2.51 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2311 |
Aligned_reads_human_rDNA |
2680287.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
26034464 |
QC_filtered_reads |
2801424 |
Aligned_reads |
23233040 |
Alignment_rate |
80.01 |
Total_efficiency |
78.0 |
Read_depth |
3.34 |
Mitochondrial_reads |
548203 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.87 |
PBC1 |
0.94 |
PBC2 |
19.95 |
Unmapped_reads |
324563 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
File_mb |
2220.82 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.67 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.41 |
Time |
0:27:19 |
Success |
06-14-21:33:32 |