Sample name: K562_PRO-seq_20
Looper stats summary
sample_name |
K562_PRO-seq_20 |
sample_desc |
20% subsample of K562 PRO-seq |
treatment |
20% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_20pct.fastq.gz |
srr |
K562_PRO_20pct |
File_mb |
7335.34 |
Read_type |
SINGLE |
Genome |
hg38 |
Raw_reads |
99310774 |
Fastq_reads |
99310774 |
Reads_with_adapter |
84602654.0 |
Uninformative_adapter_reads |
2486025.0 |
Pct_uninformative_adapter_reads |
2.5033 |
Trimmed_reads |
96824749 |
Trim_loss_rate |
2.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2311 |
Aligned_reads_human_rDNA |
8934644.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
86810990 |
QC_filtered_reads |
9341224 |
Aligned_reads |
77469766 |
Alignment_rate |
80.01 |
Total_efficiency |
78.01 |
Read_depth |
7.58 |
Mitochondrial_reads |
1829855 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.69 |
PBC1 |
0.84 |
PBC2 |
8.4 |
Unmapped_reads |
1079115 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
Pause_index |
10.75 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.39 |
Time |
3:28:03 |
Success |
06-15-10:25:55 |