Sample name: K562_PRO-seq_30
Looper stats summary
| sample_name |
K562_PRO-seq_30 |
| sample_desc |
30% subsample of K562 PRO-seq |
| treatment |
30% subsample |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_30pct.fastq.gz |
| srr |
K562_PRO_30pct |
| File_mb |
10969.75 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
148988721 |
| Fastq_reads |
148988721 |
| Reads_with_adapter |
126928151.0 |
| Uninformative_adapter_reads |
3729909.0 |
| Pct_uninformative_adapter_reads |
2.5035 |
| Trimmed_reads |
145258812 |
| Trim_loss_rate |
2.5 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2312 |
| Aligned_reads_human_rDNA |
13404967.0 |
| Alignment_rate_human_rDNA |
9.23 |
| Mapped_reads |
130234299 |
| QC_filtered_reads |
14019843 |
| Aligned_reads |
116214456 |
| Alignment_rate |
80.01 |
| Total_efficiency |
78.0 |
| Read_depth |
10.45 |
| Mitochondrial_reads |
2744825 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.6 |
| PBC1 |
0.79 |
| PBC2 |
6.54 |
| Unmapped_reads |
1619546 |
| TSS_coding_score |
13.9 |
| TSS_non-coding_score |
5.8 |
| Pause_index |
10.73 |
| Plus_FRiP |
0.36 |
| Minus_FRiP |
0.34 |
| mRNA_contamination |
1.38 |
| Time |
4:32:19 |
| Success |
06-15-11:43:19 |
