Sample name: K562_PRO-seq_80
Looper stats summary
sample_name |
K562_PRO-seq_80 |
sample_desc |
80% subsample of K562 PRO-seq |
treatment |
80% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_80pct.fastq.gz |
srr |
K562_PRO_80pct |
Raw_reads |
397272644 |
Fastq_reads |
397272644 |
Reads_with_adapter |
338450269.0 |
Uninformative_adapter_reads |
9949631.0 |
Pct_uninformative_adapter_reads |
2.5045 |
Trimmed_reads |
387323013 |
Trim_loss_rate |
2.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2313 |
Aligned_reads_human_rDNA |
35748058.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
347261528 |
QC_filtered_reads |
37392862 |
Aligned_reads |
309868666 |
Alignment_rate |
80.0 |
Total_efficiency |
78.0 |
Read_depth |
24.22 |
Mitochondrial_reads |
7320857 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.34 |
PBC1 |
0.6 |
PBC2 |
4.14 |
Unmapped_reads |
4313427 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
File_mb |
29053.1 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.91 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.37 |
Time |
2:01:34 |
Success |
06-14-23:11:45 |