Sample name: K562_PRO-seq_90
Looper stats summary
sample_name |
K562_PRO-seq_90 |
sample_desc |
90% subsample of K562 PRO-seq |
treatment |
90% subsample |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_PRO_90pct.fastq.gz |
srr |
K562_PRO_90pct |
Raw_reads |
446930263 |
Fastq_reads |
446930263 |
Reads_with_adapter |
380755198.0 |
Uninformative_adapter_reads |
11194446.0 |
Pct_uninformative_adapter_reads |
2.5047 |
Trimmed_reads |
435735817 |
Trim_loss_rate |
2.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2312 |
Aligned_reads_human_rDNA |
40216117.0 |
Alignment_rate_human_rDNA |
9.23 |
Mapped_reads |
390665301 |
QC_filtered_reads |
42066109 |
Aligned_reads |
348599192 |
Alignment_rate |
80.0 |
Total_efficiency |
78.0 |
Read_depth |
26.92 |
Mitochondrial_reads |
8235203 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.31 |
PBC1 |
0.57 |
PBC2 |
4.0 |
Unmapped_reads |
4854399 |
TSS_coding_score |
13.9 |
TSS_non-coding_score |
5.8 |
File_mb |
32665.2 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
10.94 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.37 |
Time |
1:59:42 |
Success |
06-14-23:10:30 |