Sample name: K562_RNA-seq_0
Looper stats summary
| sample_name |
K562_RNA-seq_0 |
| sample_desc |
100% K562 PRO-seq + 0% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_0pctRNA.fastq.gz |
| srr |
K562_0pctRNA |
| File_mb |
5665.7 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
59632858.0 |
| Uninformative_adapter_reads |
1752284.0 |
| Pct_uninformative_adapter_reads |
2.5033 |
| Trimmed_reads |
68247716 |
| Trim_loss_rate |
2.5 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2311 |
| Aligned_reads_human_rDNA |
6298510.0 |
| Alignment_rate_human_rDNA |
9.23 |
| Mapped_reads |
61188335 |
| QC_filtered_reads |
6585652 |
| Aligned_reads |
54602683 |
| Alignment_rate |
80.01 |
| Total_efficiency |
78.0 |
| Read_depth |
5.84 |
| Mitochondrial_reads |
1289952 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.76 |
| PBC1 |
0.88 |
| PBC2 |
10.64 |
| Unmapped_reads |
760871 |
| TSS_coding_score |
13.9 |
| TSS_non-coding_score |
5.8 |
| Pause_index |
10.69 |
| Plus_FRiP |
0.36 |
| Minus_FRiP |
0.34 |
| mRNA_contamination |
1.4 |
| Time |
2:33:27 |
| Success |
06-15-09:50:34 |
