Sample name: K562_RNA-seq_10
Looper stats summary
sample_name |
K562_RNA-seq_10 |
sample_desc |
90% K562 PRO-seq + 10% K562 RNA-seq |
treatment |
70M total reads |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_10pctRNA.fastq.gz |
srr |
K562_10pctRNA |
Raw_reads |
70000000 |
Fastq_reads |
70000000 |
Reads_with_adapter |
56155013.0 |
Uninformative_adapter_reads |
1576345.0 |
Pct_uninformative_adapter_reads |
2.2519 |
Trimmed_reads |
68423655 |
Trim_loss_rate |
2.25 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.231 |
Aligned_reads_human_rDNA |
5831595.0 |
Alignment_rate_human_rDNA |
8.52 |
Mapped_reads |
60754568 |
QC_filtered_reads |
7195486 |
Aligned_reads |
53559082 |
Alignment_rate |
78.28 |
Total_efficiency |
76.51 |
Read_depth |
5.9 |
Mitochondrial_reads |
1579435 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.77 |
PBC1 |
0.89 |
PBC2 |
11.77 |
Unmapped_reads |
1837492 |
TSS_coding_score |
15.7 |
TSS_non-coding_score |
5.5 |
File_mb |
5660.06 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
9.88 |
Plus_FRiP |
0.36 |
Minus_FRiP |
0.34 |
mRNA_contamination |
1.97 |
Time |
0:37:46 |
Success |
06-14-21:49:02 |