Sample name: K562_RNA-seq_100
Looper stats summary
| sample_name |
K562_RNA-seq_100 |
| sample_desc |
0% K562 PRO-seq + 100% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_100pctRNA.fastq.gz |
| srr |
K562_100pctRNA |
| File_mb |
5091.82 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
24858626.0 |
| Uninformative_adapter_reads |
0.0 |
| Pct_uninformative_adapter_reads |
0.0 |
| Trimmed_reads |
70000000 |
| Trim_loss_rate |
0.0 |
| Peak_adapter_insertion_size |
0 |
| Degradation_ratio |
0.0 |
| Aligned_reads_human_rDNA |
1624026.0 |
| Alignment_rate_human_rDNA |
2.32 |
| Mapped_reads |
56850944 |
| QC_filtered_reads |
12689564 |
| Aligned_reads |
44161380 |
| Alignment_rate |
63.09 |
| Total_efficiency |
63.09 |
| Read_depth |
11.83 |
| Mitochondrial_reads |
4192362 |
| Maximum_read_length |
76 |
| Genome_size |
3099922541 |
| NRF |
0.47 |
| PBC1 |
0.79 |
| PBC2 |
8.82 |
| Unmapped_reads |
11525030 |
| TSS_coding_score |
19.1 |
| TSS_non-coding_score |
2.5 |
| Pause_index |
7.79 |
| Plus_FRiP |
0.4 |
| Minus_FRiP |
0.41 |
| mRNA_contamination |
12.77 |
| Time |
2:07:14 |
| Success |
06-15-09:24:25 |
