Sample name: K562_RNA-seq_40
Looper stats summary
| sample_name |
K562_RNA-seq_40 |
| sample_desc |
60% K562 PRO-seq + 40% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_40pctRNA.fastq.gz |
| srr |
K562_40pctRNA |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
45723195.0 |
| Uninformative_adapter_reads |
1050230.0 |
| Pct_uninformative_adapter_reads |
1.5003 |
| Trimmed_reads |
68949770 |
| Trim_loss_rate |
1.5 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2309 |
| Aligned_reads_human_rDNA |
4427990.0 |
| Alignment_rate_human_rDNA |
6.42 |
| Mapped_reads |
59454882 |
| QC_filtered_reads |
9022968 |
| Aligned_reads |
50431914 |
| Alignment_rate |
73.14 |
| Total_efficiency |
72.05 |
| Read_depth |
6.34 |
| Mitochondrial_reads |
2452024 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.75 |
| PBC1 |
0.9 |
| PBC2 |
13.91 |
| Unmapped_reads |
5066898 |
| TSS_coding_score |
16.6 |
| TSS_non-coding_score |
5.0 |
| File_mb |
5584.92 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
8.63 |
| Plus_FRiP |
0.37 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
3.53 |
| Time |
0:32:36 |
| Success |
06-14-21:44:23 |
