Sample name: K562_RNA-seq_40
Looper stats summary
sample_name |
K562_RNA-seq_40 |
sample_desc |
60% K562 PRO-seq + 40% K562 RNA-seq |
treatment |
70M total reads |
protocol |
PRO |
organism |
human |
read_type |
SINGLE |
umi_len |
0 |
read1 |
/project/shefflab/data//guertin/fastq/K562_40pctRNA.fastq.gz |
srr |
K562_40pctRNA |
Raw_reads |
70000000 |
Fastq_reads |
70000000 |
Reads_with_adapter |
45723195.0 |
Uninformative_adapter_reads |
1050230.0 |
Pct_uninformative_adapter_reads |
1.5003 |
Trimmed_reads |
68949770 |
Trim_loss_rate |
1.5 |
Peak_adapter_insertion_size |
34 |
Degradation_ratio |
0.2309 |
Aligned_reads_human_rDNA |
4427990.0 |
Alignment_rate_human_rDNA |
6.42 |
Mapped_reads |
59454882 |
QC_filtered_reads |
9022968 |
Aligned_reads |
50431914 |
Alignment_rate |
73.14 |
Total_efficiency |
72.05 |
Read_depth |
6.34 |
Mitochondrial_reads |
2452024 |
Maximum_read_length |
100 |
Genome_size |
3099922541 |
NRF |
0.75 |
PBC1 |
0.9 |
PBC2 |
13.91 |
Unmapped_reads |
5066898 |
TSS_coding_score |
16.6 |
TSS_non-coding_score |
5.0 |
File_mb |
5584.92 |
Read_type |
SINGLE |
Genome |
hg38 |
Pause_index |
8.63 |
Plus_FRiP |
0.37 |
Minus_FRiP |
0.36 |
mRNA_contamination |
3.53 |
Time |
0:32:36 |
Success |
06-14-21:44:23 |