Sample name: K562_RNA-seq_70
Looper stats summary
| sample_name |
K562_RNA-seq_70 |
| sample_desc |
30% K562 PRO-seq + 70% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_70pctRNA.fastq.gz |
| srr |
K562_70pctRNA |
| File_mb |
5404.02 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
35291630.0 |
| Uninformative_adapter_reads |
524857.0 |
| Pct_uninformative_adapter_reads |
0.7498 |
| Trimmed_reads |
69475143 |
| Trim_loss_rate |
0.75 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2308 |
| Aligned_reads_human_rDNA |
3025540.0 |
| Alignment_rate_human_rDNA |
4.35 |
| Mapped_reads |
58152869 |
| QC_filtered_reads |
10854484 |
| Aligned_reads |
47298385 |
| Alignment_rate |
68.08 |
| Total_efficiency |
67.57 |
| Read_depth |
7.29 |
| Mitochondrial_reads |
3321940 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.65 |
| PBC1 |
0.88 |
| PBC2 |
13.92 |
| Unmapped_reads |
8296734 |
| TSS_coding_score |
17.7 |
| TSS_non-coding_score |
3.9 |
| Pause_index |
7.99 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.38 |
| mRNA_contamination |
5.92 |
| Time |
2:18:47 |
| Success |
06-15-09:35:58 |
