Sample name: K562_RNA-seq_80
Looper stats summary
| sample_name |
K562_RNA-seq_80 |
| sample_desc |
20% K562 PRO-seq + 80% K562 RNA-seq |
| treatment |
70M total reads |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
0 |
| read1 |
/project/shefflab/data//guertin/fastq/K562_80pctRNA.fastq.gz |
| srr |
K562_80pctRNA |
| File_mb |
5315.52 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
70000000 |
| Fastq_reads |
70000000 |
| Reads_with_adapter |
31815025.0 |
| Uninformative_adapter_reads |
349949.0 |
| Pct_uninformative_adapter_reads |
0.4999 |
| Trimmed_reads |
69650051 |
| Trim_loss_rate |
0.5 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2308 |
| Aligned_reads_human_rDNA |
2559080.0 |
| Alignment_rate_human_rDNA |
3.67 |
| Mapped_reads |
57718557 |
| QC_filtered_reads |
11466593 |
| Aligned_reads |
46251964 |
| Alignment_rate |
66.41 |
| Total_efficiency |
66.07 |
| Read_depth |
7.92 |
| Mitochondrial_reads |
3613062 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.6 |
| PBC1 |
0.86 |
| PBC2 |
12.89 |
| Unmapped_reads |
9372414 |
| TSS_coding_score |
18.1 |
| TSS_non-coding_score |
3.4 |
| Pause_index |
7.77 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.39 |
| mRNA_contamination |
7.26 |
| Time |
2:18:35 |
| Success |
06-15-09:35:45 |
