Sample name: H9_PRO-seq_50
Looper stats summary
sample_name |
H9_PRO-seq_50 |
sample_desc |
50% subset H9 PRO-seq 2 |
treatment |
DMSO |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE... |
read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_50pct_PE... |
srr |
H9_PRO-seq_50pct |
File_mb |
1207.83 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
57859902 |
Fastq_reads |
57859902 |
Reads_with_adapter |
22925851.0 |
Uninformative_adapter_reads |
14307341.0 |
Duplicate_reads |
987746.0 |
Pct_uninformative_adapter_reads |
49.4551 |
Trimmed_reads |
28328462 |
Trim_loss_rate |
51.04 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
1.0308 |
Aligned_reads_human_rDNA |
2915278.0 |
Alignment_rate_human_rDNA |
10.29 |
Mapped_reads |
21857551 |
QC_filtered_reads |
12774487 |
Aligned_reads |
9083064.0 |
Alignment_rate |
32.06 |
Total_efficiency |
15.7 |
Read_depth |
2.31 |
Mitochondrial_reads |
420662 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.8538 |
NRF |
1.0 |
PBC1 |
4870901.0 |
PBC2 |
4870901.0 |
Unmapped_reads |
3332293 |
TSS_coding_score |
33.8 |
TSS_non-coding_score |
12.3 |
Pause_index |
33.39 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.36 |
mRNA_contamination |
1.29 |
Time |
1:38:18 |
Success |
06-15-08:55:36 |