Sample name: Jurkat_ChRO-seq_1
Looper stats summary
| sample_name |
Jurkat_ChRO-seq_1 |
| sample_desc |
Jurkat ChRO-seq |
| treatment |
none |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
6 |
| read1 |
/project/shefflab/data//sra_fastq/SRR7616133.fastq.gz |
| srr |
SRR7616133 |
| Raw_reads |
37740511 |
| Fastq_reads |
37740511 |
| Trimmed_reads |
32783879 |
| Trim_loss_rate |
13.13 |
| Reads_with_adapter |
34473620.0 |
| Uninformative_adapter_reads |
2012355.0 |
| Duplicate_reads |
14846147.0 |
| Pct_uninformative_adapter_reads |
5.3321 |
| Peak_adapter_insertion_size |
20 |
| Degradation_ratio |
0.9566 |
| Aligned_reads_human_rDNA |
3493243.0 |
| Alignment_rate_human_rDNA |
10.66 |
| Mapped_reads |
28177350 |
| QC_filtered_reads |
6839271 |
| Aligned_reads |
21338079 |
| Alignment_rate |
65.09 |
| Total_efficiency |
56.54 |
| Read_depth |
3.87 |
| Mitochondrial_reads |
4738 |
| Maximum_read_length |
70 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.7897 |
| NRF |
0.38 |
| PBC1 |
0.64 |
| PBC2 |
3.39 |
| Unmapped_reads |
1113286 |
| TSS_coding_score |
55.1 |
| TSS_non-coding_score |
12.6 |
| File_mb |
1330.25 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Pause_index |
42.69 |
| Plus_FRiP |
0.36 |
| Minus_FRiP |
0.34 |
| mRNA_contamination |
1.19 |
| Time |
0:19:54 |
| Success |
06-14-21:34:30 |
