Sample name: Jurkat_ChRO-seq_2
Looper stats summary
| sample_name |
Jurkat_ChRO-seq_2 |
| sample_desc |
Jurkat ChRO-seq |
| treatment |
none |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| umi_len |
6 |
| read1 |
/project/shefflab/data//sra_fastq/SRR7616134.fastq.gz |
| srr |
SRR7616134 |
| File_mb |
1914.91 |
| Read_type |
SINGLE |
| Genome |
hg38 |
| Raw_reads |
49841170 |
| Fastq_reads |
49841170 |
| Trimmed_reads |
48264585 |
| Trim_loss_rate |
3.16 |
| Reads_with_adapter |
42416468.0 |
| Uninformative_adapter_reads |
223715.0 |
| Duplicate_reads |
5764233.0 |
| Pct_uninformative_adapter_reads |
0.4489 |
| Peak_adapter_insertion_size |
39 |
| Degradation_ratio |
0.4899 |
| Aligned_reads_human_rDNA |
3950647.0 |
| Alignment_rate_human_rDNA |
8.19 |
| Mapped_reads |
41878067 |
| QC_filtered_reads |
7874013 |
| Aligned_reads |
34004054 |
| Alignment_rate |
70.45 |
| Total_efficiency |
68.22 |
| Read_depth |
4.27 |
| Mitochondrial_reads |
18250 |
| Maximum_read_length |
70 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.646 |
| NRF |
0.53 |
| PBC1 |
0.8 |
| PBC2 |
8.39 |
| Unmapped_reads |
2435871 |
| TSS_coding_score |
68.4 |
| TSS_non-coding_score |
23.2 |
| Pause_index |
85.85 |
| Plus_FRiP |
0.36 |
| Minus_FRiP |
0.35 |
| mRNA_contamination |
1.2 |
| Time |
1:55:16 |
| Success |
06-15-09:12:28 |
