Running in a container
Whether you are using docker
or singularity
, we have a solution to run the pipeline using containers that dramatically reduces the installation burden.
In addition to cloning the PEPPRO
repository, this requires the installation and configuration of a single python package, our multi-container environment manager bulker.
To make usage with PEPPRO
straightforward, there is a step-by-step guide to run PEPPRO
with bulker
.