Using custom adapters

A custom adapter file can be set in the pipeline configuration file, pipelines/peppro.yaml. If left null, the default, then it uses the included adapter file.

Alternatively, you may specify a path to your own adapter file. For example: adapters: /home/userid/my_custom_adapters.fa

The only requirement here is that it expects specific headers for 5' and 3' adapters. For example: