Using custom adapters
A custom adapter file can be set in the pipeline configuration file, pipelines/peppro.yaml
. If left null
, the default, then it uses the included adapter file.
Alternatively, you may specify a path to your own adapter file.
For example: adapters: /home/userid/my_custom_adapters.fa
The only requirement here is that it expects specific headers for 5' and 3' adapters. For example:
>5prime
TGGAATTCTCGGGTGCCAAGG
>3prime
GATCGTCGGACTGTAGAACTCTGAAC