Sample name: H9_PRO-seq_1
Looper stats summary
| sample_name |
H9_PRO-seq_1 |
| sample_desc |
H9 PRO-seq |
| treatment |
DMSO |
| protocol |
PRO |
| organism |
human |
| read_type |
PAIRED |
| umi_len |
8 |
| read1 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE1.fastq.gz |
| read2 |
/project/shefflab/data//guertin/fastq/H9_DMSO_rep1_PE2.fastq.gz |
| srr |
H9_DMSO_rep1 |
| Raw_reads |
97729860 |
| Fastq_reads |
97729860 |
| File_mb |
2469.73 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Reads_with_adapter |
34822522.0 |
| Uninformative_adapter_reads |
17998987.0 |
| Duplicate_reads |
3516802.0 |
| Pct_uninformative_adapter_reads |
36.8342 |
| Trimmed_reads |
60442686 |
| Trim_loss_rate |
38.15 |
| Peak_adapter_insertion_size |
20 |
| Degradation_ratio |
0.8896 |
| Aligned_reads_human_rDNA |
5408680.0 |
| Alignment_rate_human_rDNA |
8.95 |
| Mapped_reads |
48339851 |
| QC_filtered_reads |
27585022 |
| Aligned_reads |
20754829.0 |
| Alignment_rate |
34.34 |
| Total_efficiency |
21.24 |
| Read_depth |
3.26 |
| Mitochondrial_reads |
674956 |
| Maximum_read_length |
38 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.8774 |
| NRF |
1.0 |
| PBC1 |
10983354.0 |
| PBC2 |
10983354.0 |
| Unmapped_reads |
6258301 |
| TSS_coding_score |
26.7 |
| TSS_non-coding_score |
10.1 |
| Pause_index |
26.45 |
| Plus_FRiP |
0.38 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
1.23 |
| Time |
2:50:51 |
| Success |
06-15-15:50:01 |
