Sample name: H9_PRO-seq_90
Looper stats summary
| sample_name |
H9_PRO-seq_90 |
| sample_desc |
90% subset H9 PRO-seq 2 |
| treatment |
DMSO |
| protocol |
PRO |
| organism |
human |
| read_type |
PAIRED |
| umi_len |
8 |
| read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE... |
| read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_90pct_PE... |
| srr |
H9_PRO-seq_90pct |
| File_mb |
2146.02 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Raw_reads |
104146252 |
| Fastq_reads |
104146252 |
| Reads_with_adapter |
41262698.0 |
| Uninformative_adapter_reads |
25749458.0 |
| Duplicate_reads |
2562794.0 |
| Pct_uninformative_adapter_reads |
49.4487 |
| Trimmed_reads |
50996838 |
| Trim_loss_rate |
51.03 |
| Peak_adapter_insertion_size |
20 |
| Degradation_ratio |
1.0318 |
| Aligned_reads_human_rDNA |
5245576.0 |
| Alignment_rate_human_rDNA |
10.29 |
| Mapped_reads |
39350499 |
| QC_filtered_reads |
23000545 |
| Aligned_reads |
16349954.5 |
| Alignment_rate |
32.06 |
| Total_efficiency |
15.7 |
| Read_depth |
2.95 |
| Mitochondrial_reads |
756629 |
| Maximum_read_length |
38 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.8542 |
| NRF |
1.0 |
| PBC1 |
8767451.5 |
| PBC2 |
8767451.5 |
| Unmapped_reads |
5998097 |
| TSS_coding_score |
33.8 |
| TSS_non-coding_score |
12.3 |
| Pause_index |
33.96 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
1.29 |
| Time |
3:00:51 |
| Success |
06-15-10:18:16 |
