Sample name: H9_PRO-seq_30
Looper stats summary
sample_name |
H9_PRO-seq_30 |
sample_desc |
30% subset H9 PRO-seq 2 |
treatment |
DMSO |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE... |
read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_30pct_PE... |
srr |
H9_PRO-seq_30pct |
Raw_reads |
34718962 |
Fastq_reads |
34718962 |
Reads_with_adapter |
13756701.0 |
Uninformative_adapter_reads |
8586429.0 |
Duplicate_reads |
439732.0 |
Pct_uninformative_adapter_reads |
49.4625 |
Trimmed_reads |
16996174 |
Trim_loss_rate |
51.05 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
1.0316 |
Aligned_reads_human_rDNA |
1748068.0 |
Alignment_rate_human_rDNA |
10.29 |
Mapped_reads |
13112915 |
QC_filtered_reads |
7664259 |
Aligned_reads |
5448656.5 |
Alignment_rate |
32.06 |
Total_efficiency |
15.69 |
Read_depth |
1.96 |
Mitochondrial_reads |
251868 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.8535 |
NRF |
1.0 |
PBC1 |
2922148.5 |
PBC2 |
2922148.5 |
Unmapped_reads |
2000641 |
TSS_coding_score |
33.4 |
TSS_non-coding_score |
12.2 |
File_mb |
732.68 |
Read_type |
PAIRED |
Genome |
hg38 |
Pause_index |
32.88 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.36 |
mRNA_contamination |
1.3 |
Time |
0:23:20 |
Success |
06-14-21:41:53 |