Sample name: H9_PRO-seq_40
Looper stats summary
sample_name |
H9_PRO-seq_40 |
sample_desc |
40% subset H9 PRO-seq 2 |
treatment |
DMSO |
protocol |
PRO |
organism |
human |
read_type |
PAIRED |
umi_len |
8 |
read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
srr |
H9_PRO-seq_40pct |
File_mb |
971.29 |
Read_type |
PAIRED |
Genome |
hg38 |
Raw_reads |
46292984 |
Fastq_reads |
46292984 |
Reads_with_adapter |
18342898.0 |
Uninformative_adapter_reads |
11448553.0 |
Duplicate_reads |
691509.0 |
Pct_uninformative_adapter_reads |
49.4613 |
Trimmed_reads |
22663440 |
Trim_loss_rate |
51.04 |
Peak_adapter_insertion_size |
20 |
Degradation_ratio |
1.0318 |
Aligned_reads_human_rDNA |
2331094.0 |
Alignment_rate_human_rDNA |
10.29 |
Mapped_reads |
17485980 |
QC_filtered_reads |
10220292 |
Aligned_reads |
7265688.5 |
Alignment_rate |
32.06 |
Total_efficiency |
15.7 |
Read_depth |
2.14 |
Mitochondrial_reads |
336077 |
Maximum_read_length |
38 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.8539 |
NRF |
1.0 |
PBC1 |
3896460.0 |
PBC2 |
3896460.0 |
Unmapped_reads |
2667586 |
TSS_coding_score |
33.6 |
TSS_non-coding_score |
12.3 |
Pause_index |
33.24 |
Plus_FRiP |
0.39 |
Minus_FRiP |
0.36 |
mRNA_contamination |
1.29 |
Time |
1:44:21 |
Success |
06-15-09:01:38 |