Sample name: H9_PRO-seq_40
Looper stats summary
| sample_name |
H9_PRO-seq_40 |
| sample_desc |
40% subset H9 PRO-seq 2 |
| treatment |
DMSO |
| protocol |
PRO |
| organism |
human |
| read_type |
PAIRED |
| umi_len |
8 |
| read1 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
| read2 |
/project/shefflab/data//guertin/fastq/H9_PRO-seq_40pct_PE... |
| srr |
H9_PRO-seq_40pct |
| File_mb |
971.29 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Raw_reads |
46292984 |
| Fastq_reads |
46292984 |
| Reads_with_adapter |
18342898.0 |
| Uninformative_adapter_reads |
11448553.0 |
| Duplicate_reads |
691509.0 |
| Pct_uninformative_adapter_reads |
49.4613 |
| Trimmed_reads |
22663440 |
| Trim_loss_rate |
51.04 |
| Peak_adapter_insertion_size |
20 |
| Degradation_ratio |
1.0318 |
| Aligned_reads_human_rDNA |
2331094.0 |
| Alignment_rate_human_rDNA |
10.29 |
| Mapped_reads |
17485980 |
| QC_filtered_reads |
10220292 |
| Aligned_reads |
7265688.5 |
| Alignment_rate |
32.06 |
| Total_efficiency |
15.7 |
| Read_depth |
2.14 |
| Mitochondrial_reads |
336077 |
| Maximum_read_length |
38 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.8539 |
| NRF |
1.0 |
| PBC1 |
3896460.0 |
| PBC2 |
3896460.0 |
| Unmapped_reads |
2667586 |
| TSS_coding_score |
33.6 |
| TSS_non-coding_score |
12.3 |
| Pause_index |
33.24 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
1.29 |
| Time |
1:44:21 |
| Success |
06-15-09:01:38 |
